Strain Fitness in Pseudomonas simiae WCS417 around PS417_11100

Experiment: Phosphomycin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11095 and PS417_11100 are separated by 93 nucleotidesPS417_11100 and PS417_11105 are separated by 2 nucleotides PS417_11095: PS417_11095 - fatty acid desaturase, at 2,378,965 to 2,380,059 _11095 PS417_11100: PS417_11100 - MocE, at 2,380,153 to 2,380,473 _11100 PS417_11105: PS417_11105 - pyridine nucleotide-disulfide oxidoreductase, at 2,380,476 to 2,381,675 _11105 Position (kb) 2380 2381Strain fitness (log2 ratio) -1 0 1at 2379.182 kb on - strand, within PS417_11095at 2379.606 kb on + strand, within PS417_11095at 2379.637 kb on + strand, within PS417_11095at 2379.698 kb on + strand, within PS417_11095at 2379.778 kb on + strandat 2379.779 kb on - strand, within PS417_11095at 2379.779 kb on - strand, within PS417_11095at 2379.802 kb on - strand, within PS417_11095at 2379.805 kb on + strand, within PS417_11095at 2379.821 kb on - strandat 2379.821 kb on - strand, within PS417_11095at 2379.842 kb on - strand, within PS417_11095at 2379.842 kb on - strand, within PS417_11095at 2379.911 kb on - strand, within PS417_11095at 2379.931 kb on + strand, within PS417_11095at 2379.931 kb on + strand, within PS417_11095at 2379.932 kb on - strand, within PS417_11095at 2380.137 kb on - strandat 2380.237 kb on + strand, within PS417_11100at 2380.238 kb on - strand, within PS417_11100at 2380.238 kb on - strand, within PS417_11100

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml
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2,379,182 - PS417_11095 0.20 +0.0
2,379,606 + PS417_11095 0.59 -0.6
2,379,637 + PS417_11095 0.61 -0.7
2,379,698 + PS417_11095 0.67 +0.1
2,379,778 + +1.2
2,379,779 - PS417_11095 0.74 +0.4
2,379,779 - PS417_11095 0.74 +0.7
2,379,802 - PS417_11095 0.76 +0.5
2,379,805 + PS417_11095 0.77 -1.0
2,379,821 - +0.2
2,379,821 - PS417_11095 0.78 +0.6
2,379,842 - PS417_11095 0.80 +0.3
2,379,842 - PS417_11095 0.80 +0.5
2,379,911 - PS417_11095 0.86 -0.1
2,379,931 + PS417_11095 0.88 -0.2
2,379,931 + PS417_11095 0.88 -0.9
2,379,932 - PS417_11095 0.88 -0.2
2,380,137 - -0.8
2,380,237 + PS417_11100 0.26 -0.5
2,380,238 - PS417_11100 0.26 -0.3
2,380,238 - PS417_11100 0.26 -1.5

Or see this region's nucleotide sequence