Strain Fitness in Pseudomonas simiae WCS417 around PS417_11100
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 2,379,182 | - | PS417_11095 | 0.20 | +0.0 | |
| 2,379,606 | + | PS417_11095 | 0.59 | -0.6 | |
| 2,379,637 | + | PS417_11095 | 0.61 | -0.7 | |
| 2,379,698 | + | PS417_11095 | 0.67 | +0.1 | |
| 2,379,778 | + | +1.2 | |||
| 2,379,779 | - | PS417_11095 | 0.74 | +0.4 | |
| 2,379,779 | - | PS417_11095 | 0.74 | +0.7 | |
| 2,379,802 | - | PS417_11095 | 0.76 | +0.5 | |
| 2,379,805 | + | PS417_11095 | 0.77 | -1.0 | |
| 2,379,821 | - | +0.2 | |||
| 2,379,821 | - | PS417_11095 | 0.78 | +0.6 | |
| 2,379,842 | - | PS417_11095 | 0.80 | +0.3 | |
| 2,379,842 | - | PS417_11095 | 0.80 | +0.5 | |
| 2,379,911 | - | PS417_11095 | 0.86 | -0.1 | |
| 2,379,931 | + | PS417_11095 | 0.88 | -0.2 | |
| 2,379,931 | + | PS417_11095 | 0.88 | -0.9 | |
| 2,379,932 | - | PS417_11095 | 0.88 | -0.2 | |
| 2,380,137 | - | -0.8 | |||
| 2,380,237 | + | PS417_11100 | 0.26 | -0.5 | |
| 2,380,238 | - | PS417_11100 | 0.26 | -0.3 | |
| 2,380,238 | - | PS417_11100 | 0.26 | -1.5 |
Or see this region's nucleotide sequence