Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09705 and PS417_09710 are separated by 10 nucleotides PS417_09710 and PS417_09715 overlap by 4 nucleotides PS417_09715 and PS417_09720 are separated by 7 nucleotides PS417_09720 and PS417_09725 are separated by 10 nucleotides
PS417_09705: PS417_09705 - hypothetical protein, at 2,104,259 to 2,104,987
_09705
PS417_09710: PS417_09710 - dehydrogenase, at 2,104,998 to 2,105,723
_09710
PS417_09715: PS417_09715 - hypothetical protein, at 2,105,720 to 2,106,856
_09715
PS417_09720: PS417_09720 - methyltransferase, at 2,106,864 to 2,107,634
_09720
PS417_09725: PS417_09725 - transporter, at 2,107,645 to 2,108,874
_09725
Position (kb)
2105
2106
2107 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2104.771 kb on - strand, within PS417_09705 at 2104.882 kb on + strand, within PS417_09705 at 2105.144 kb on - strand, within PS417_09710 at 2105.144 kb on - strand, within PS417_09710 at 2105.208 kb on + strand, within PS417_09710 at 2105.257 kb on - strand at 2105.274 kb on + strand at 2105.275 kb on - strand, within PS417_09710 at 2105.296 kb on + strand, within PS417_09710 at 2105.297 kb on - strand, within PS417_09710 at 2105.334 kb on + strand at 2105.440 kb on - strand, within PS417_09710 at 2105.553 kb on + strand, within PS417_09710 at 2105.554 kb on - strand, within PS417_09710 at 2105.961 kb on + strand, within PS417_09715 at 2105.981 kb on - strand, within PS417_09715 at 2106.335 kb on + strand, within PS417_09715 at 2106.384 kb on - strand, within PS417_09715 at 2106.665 kb on - strand, within PS417_09715 at 2106.722 kb on + strand, within PS417_09715 at 2106.722 kb on + strand, within PS417_09715 at 2106.722 kb on + strand, within PS417_09715 at 2106.722 kb on + strand, within PS417_09715 at 2106.722 kb on + strand, within PS417_09715 at 2106.723 kb on - strand, within PS417_09715 at 2106.827 kb on + strand at 2106.828 kb on - strand at 2106.828 kb on - strand at 2106.898 kb on + strand at 2106.906 kb on + strand at 2106.906 kb on + strand at 2106.906 kb on + strand at 2107.371 kb on + strand, within PS417_09720 at 2107.371 kb on + strand, within PS417_09720 at 2107.372 kb on - strand, within PS417_09720 at 2107.372 kb on - strand at 2107.392 kb on + strand, within PS417_09720 at 2107.395 kb on + strand, within PS417_09720 at 2107.395 kb on + strand, within PS417_09720 at 2107.396 kb on - strand, within PS417_09720 at 2107.396 kb on - strand, within PS417_09720 at 2107.458 kb on + strand, within PS417_09720 at 2107.459 kb on - strand, within PS417_09720 at 2107.497 kb on + strand, within PS417_09720 at 2107.584 kb on + strand at 2107.730 kb on - strand at 2107.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 2,104,771 - PS417_09705 0.70 -1.5 2,104,882 + PS417_09705 0.85 -1.0 2,105,144 - PS417_09710 0.20 -0.2 2,105,144 - PS417_09710 0.20 -0.9 2,105,208 + PS417_09710 0.29 -0.0 2,105,257 - +2.4 2,105,274 + +0.3 2,105,275 - PS417_09710 0.38 +1.2 2,105,296 + PS417_09710 0.41 -0.3 2,105,297 - PS417_09710 0.41 -0.7 2,105,334 + +0.3 2,105,440 - PS417_09710 0.61 -0.5 2,105,553 + PS417_09710 0.76 +0.1 2,105,554 - PS417_09710 0.77 -0.1 2,105,961 + PS417_09715 0.21 -0.1 2,105,981 - PS417_09715 0.23 +0.0 2,106,335 + PS417_09715 0.54 -0.1 2,106,384 - PS417_09715 0.58 -0.1 2,106,665 - PS417_09715 0.83 +0.7 2,106,722 + PS417_09715 0.88 +0.2 2,106,722 + PS417_09715 0.88 +4.7 2,106,722 + PS417_09715 0.88 +0.3 2,106,722 + PS417_09715 0.88 +0.1 2,106,722 + PS417_09715 0.88 -0.4 2,106,723 - PS417_09715 0.88 +0.0 2,106,827 + +0.3 2,106,828 - -0.0 2,106,828 - -0.4 2,106,898 + +0.9 2,106,906 + -0.4 2,106,906 + +0.9 2,106,906 + +0.2 2,107,371 + PS417_09720 0.66 -0.6 2,107,371 + PS417_09720 0.66 -0.1 2,107,372 - PS417_09720 0.66 -1.0 2,107,372 - -0.5 2,107,392 + PS417_09720 0.68 +0.6 2,107,395 + PS417_09720 0.69 -0.8 2,107,395 + PS417_09720 0.69 +1.9 2,107,396 - PS417_09720 0.69 -0.7 2,107,396 - PS417_09720 0.69 +0.3 2,107,458 + PS417_09720 0.77 -0.8 2,107,459 - PS417_09720 0.77 -0.4 2,107,497 + PS417_09720 0.82 -0.3 2,107,584 + -1.5 2,107,730 - +0.5 2,107,744 + -1.1
Or see this region's nucleotide sequence