Strain Fitness in Pseudomonas simiae WCS417 around PS417_09365

Experiment: Phosphomycin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09360 and PS417_09365 are separated by 347 nucleotidesPS417_09365 and PS417_09370 are separated by 71 nucleotidesPS417_09370 and PS417_09375 overlap by 1 nucleotides PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456 _09360 PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517 _09365 PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503 _09370 PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402 _09375 Position (kb) 2031 2032 2033Strain fitness (log2 ratio) -1 0 1at 2030.911 kb on + strand, within PS417_09360at 2030.963 kb on + strand, within PS417_09360at 2030.963 kb on + strand, within PS417_09360at 2030.994 kb on + strand, within PS417_09360at 2031.054 kb on - strand, within PS417_09360at 2031.122 kb on + strand, within PS417_09360at 2031.337 kb on + strand, within PS417_09360at 2031.337 kb on + strandat 2031.526 kb on + strandat 2031.526 kb on + strandat 2031.613 kb on + strandat 2031.656 kb on + strandat 2031.657 kb on - strandat 2031.783 kb on + strandat 2031.792 kb on + strandat 2031.792 kb on + strandat 2031.962 kb on - strand, within PS417_09365at 2031.987 kb on + strandat 2032.035 kb on + strand, within PS417_09365at 2032.224 kb on + strandat 2032.224 kb on + strand, within PS417_09365at 2032.224 kb on + strand, within PS417_09365at 2032.224 kb on + strand, within PS417_09365at 2032.225 kb on - strand, within PS417_09365at 2032.228 kb on + strand, within PS417_09365at 2032.229 kb on - strand, within PS417_09365at 2032.435 kb on - strand, within PS417_09365at 2032.857 kb on + strand, within PS417_09370at 2033.346 kb on - strand, within PS417_09370at 2033.349 kb on - strand, within PS417_09370

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml
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2,030,911 + PS417_09360 0.49 -0.1
2,030,963 + PS417_09360 0.54 +0.5
2,030,963 + PS417_09360 0.54 +0.5
2,030,994 + PS417_09360 0.57 -0.1
2,031,054 - PS417_09360 0.63 -0.9
2,031,122 + PS417_09360 0.69 -0.8
2,031,337 + PS417_09360 0.89 +1.3
2,031,337 + +0.5
2,031,526 + -1.3
2,031,526 + -0.6
2,031,613 + +0.5
2,031,656 + -1.3
2,031,657 - -0.6
2,031,783 + -0.5
2,031,792 + +1.5
2,031,792 + -0.3
2,031,962 - PS417_09365 0.22 -0.6
2,031,987 + +0.3
2,032,035 + PS417_09365 0.32 -1.3
2,032,224 + -0.1
2,032,224 + PS417_09365 0.59 +0.9
2,032,224 + PS417_09365 0.59 -0.7
2,032,224 + PS417_09365 0.59 -0.5
2,032,225 - PS417_09365 0.59 -1.6
2,032,228 + PS417_09365 0.59 +0.1
2,032,229 - PS417_09365 0.60 +0.4
2,032,435 - PS417_09365 0.88 -0.1
2,032,857 + PS417_09370 0.29 -0.4
2,033,346 - PS417_09370 0.83 +0.6
2,033,349 - PS417_09370 0.83 +0.9

Or see this region's nucleotide sequence