Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06725 and PS417_06730 are separated by 10 nucleotides PS417_06730 and PS417_06735 are separated by 10 nucleotides PS417_06735 and PS417_06740 are separated by 10 nucleotides
PS417_06725: PS417_06725 - alpha-ketoglutarate permease, at 1,488,815 to 1,490,110
_06725
PS417_06730: PS417_06730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,490,121 to 1,491,476
_06730
PS417_06735: PS417_06735 - 3-oxoadipate enol-lactonase, at 1,491,487 to 1,492,278
_06735
PS417_06740: PS417_06740 - 4-carboxymuconolactone decarboxylase, at 1,492,289 to 1,492,687
_06740
Position (kb)
1490
1491
1492 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1489.148 kb on + strand, within PS417_06725 at 1489.148 kb on + strand, within PS417_06725 at 1489.245 kb on - strand, within PS417_06725 at 1489.245 kb on - strand, within PS417_06725 at 1489.245 kb on - strand, within PS417_06725 at 1489.298 kb on + strand, within PS417_06725 at 1489.302 kb on + strand, within PS417_06725 at 1489.303 kb on - strand, within PS417_06725 at 1489.598 kb on + strand, within PS417_06725 at 1489.598 kb on + strand, within PS417_06725 at 1489.598 kb on + strand, within PS417_06725 at 1489.599 kb on - strand, within PS417_06725 at 1489.599 kb on - strand, within PS417_06725 at 1489.652 kb on + strand, within PS417_06725 at 1489.652 kb on + strand, within PS417_06725 at 1489.652 kb on + strand, within PS417_06725 at 1489.653 kb on - strand, within PS417_06725 at 1489.653 kb on - strand, within PS417_06725 at 1489.653 kb on - strand, within PS417_06725 at 1489.863 kb on - strand, within PS417_06725 at 1489.926 kb on + strand, within PS417_06725 at 1489.976 kb on + strand, within PS417_06725 at 1490.021 kb on + strand at 1490.022 kb on - strand at 1490.022 kb on - strand at 1490.027 kb on + strand at 1490.028 kb on - strand at 1490.106 kb on + strand at 1490.107 kb on - strand at 1490.107 kb on - strand at 1490.107 kb on - strand at 1490.158 kb on - strand at 1490.158 kb on - strand at 1490.586 kb on - strand, within PS417_06730 at 1491.145 kb on + strand, within PS417_06730 at 1491.497 kb on + strand at 1491.497 kb on + strand at 1491.497 kb on + strand at 1491.923 kb on + strand, within PS417_06735 at 1492.058 kb on + strand, within PS417_06735 at 1492.175 kb on + strand, within PS417_06735 at 1492.201 kb on + strand at 1492.201 kb on + strand at 1492.202 kb on - strand at 1492.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 1,489,148 + PS417_06725 0.26 -0.3 1,489,148 + PS417_06725 0.26 +0.2 1,489,245 - PS417_06725 0.33 +0.0 1,489,245 - PS417_06725 0.33 +0.5 1,489,245 - PS417_06725 0.33 +0.3 1,489,298 + PS417_06725 0.37 +0.5 1,489,302 + PS417_06725 0.38 +1.0 1,489,303 - PS417_06725 0.38 +0.3 1,489,598 + PS417_06725 0.60 +1.3 1,489,598 + PS417_06725 0.60 -0.0 1,489,598 + PS417_06725 0.60 +0.4 1,489,599 - PS417_06725 0.60 -0.4 1,489,599 - PS417_06725 0.60 +0.1 1,489,652 + PS417_06725 0.65 +1.0 1,489,652 + PS417_06725 0.65 +1.3 1,489,652 + PS417_06725 0.65 -0.4 1,489,653 - PS417_06725 0.65 -0.1 1,489,653 - PS417_06725 0.65 +0.6 1,489,653 - PS417_06725 0.65 -0.8 1,489,863 - PS417_06725 0.81 -0.3 1,489,926 + PS417_06725 0.86 +2.4 1,489,976 + PS417_06725 0.90 -0.6 1,490,021 + -0.9 1,490,022 - -1.1 1,490,022 - +0.2 1,490,027 + -0.2 1,490,028 - -0.3 1,490,106 + +0.6 1,490,107 - -0.7 1,490,107 - +0.6 1,490,107 - +0.0 1,490,158 - -0.1 1,490,158 - -0.7 1,490,586 - PS417_06730 0.34 -2.0 1,491,145 + PS417_06730 0.76 -1.1 1,491,497 + -0.4 1,491,497 + -0.3 1,491,497 + -0.8 1,491,923 + PS417_06735 0.55 +0.2 1,492,058 + PS417_06735 0.72 -0.2 1,492,175 + PS417_06735 0.87 -0.3 1,492,201 + +0.1 1,492,201 + -0.5 1,492,202 - +0.2 1,492,202 - -0.4
Or see this region's nucleotide sequence