Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06165 and PS417_06170 are separated by 112 nucleotides PS417_06170 and PS417_06175 overlap by 4 nucleotides PS417_06175 and PS417_06180 are separated by 64 nucleotides
PS417_06165: PS417_06165 - thiamine biosynthesis protein ThiF, at 1,367,564 to 1,368,373
_06165
PS417_06170: PS417_06170 - Fe-S metabolism protein SufE, at 1,368,486 to 1,368,899
_06170
PS417_06175: PS417_06175 - cysteine sulfinate desulfinase, at 1,368,896 to 1,370,101
_06175
PS417_06180: PS417_06180 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 1,370,166 to 1,371,200
_06180
Position (kb)
1368
1369
1370
1371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 1367.897 kb on + strand, within PS417_06165 at 1367.898 kb on - strand, within PS417_06165 at 1367.898 kb on - strand, within PS417_06165 at 1368.062 kb on - strand, within PS417_06165 at 1368.128 kb on - strand, within PS417_06165 at 1368.340 kb on - strand at 1368.371 kb on + strand at 1368.378 kb on + strand at 1368.497 kb on + strand at 1368.907 kb on + strand at 1369.145 kb on + strand, within PS417_06175 at 1369.329 kb on + strand, within PS417_06175 at 1369.452 kb on + strand, within PS417_06175 at 1369.452 kb on + strand, within PS417_06175 at 1369.452 kb on + strand, within PS417_06175 at 1369.784 kb on + strand, within PS417_06175 at 1369.785 kb on - strand, within PS417_06175 at 1369.801 kb on - strand, within PS417_06175 at 1369.968 kb on + strand, within PS417_06175 at 1369.971 kb on + strand, within PS417_06175 at 1370.031 kb on + strand at 1370.032 kb on - strand at 1370.032 kb on - strand at 1370.117 kb on + strand at 1370.118 kb on - strand at 1370.118 kb on - strand at 1370.118 kb on - strand at 1370.167 kb on + strand at 1370.167 kb on + strand at 1370.167 kb on + strand at 1370.167 kb on + strand at 1370.168 kb on - strand at 1370.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.001 mg/ml remove 1,367,897 + PS417_06165 0.41 -0.2 1,367,898 - PS417_06165 0.41 -0.4 1,367,898 - PS417_06165 0.41 -1.1 1,368,062 - PS417_06165 0.61 +0.6 1,368,128 - PS417_06165 0.70 +1.1 1,368,340 - +1.0 1,368,371 + +0.2 1,368,378 + -0.6 1,368,497 + -0.2 1,368,907 + -0.2 1,369,145 + PS417_06175 0.21 +7.9 1,369,329 + PS417_06175 0.36 -0.7 1,369,452 + PS417_06175 0.46 -0.7 1,369,452 + PS417_06175 0.46 +0.5 1,369,452 + PS417_06175 0.46 -2.3 1,369,784 + PS417_06175 0.74 -2.9 1,369,785 - PS417_06175 0.74 -0.3 1,369,801 - PS417_06175 0.75 +0.3 1,369,968 + PS417_06175 0.89 -0.1 1,369,971 + PS417_06175 0.89 +0.2 1,370,031 + -1.7 1,370,032 - -0.4 1,370,032 - +1.1 1,370,117 + +0.0 1,370,118 - -0.5 1,370,118 - +0.2 1,370,118 - +1.4 1,370,167 + -0.6 1,370,167 + -0.1 1,370,167 + +1.1 1,370,167 + +0.7 1,370,168 - -1.7 1,370,168 - +1.1
Or see this region's nucleotide sequence