Experiment: Aluminum chloride 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03470 and PS417_03475 overlap by 14 nucleotides PS417_03475 and PS417_03480 overlap by 4 nucleotides PS417_03480 and PS417_03485 overlap by 4 nucleotides PS417_03485 and PS417_03490 overlap by 4 nucleotides PS417_03490 and PS417_03495 are separated by 7 nucleotides PS417_03495 and PS417_03500 are separated by 10 nucleotides
PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416
_03470
PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831
_03475
PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286
_03480
PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296
_03485
PS417_03490: PS417_03490 - type III secretion system protein SsaR, at 801,293 to 801,946
_03490
PS417_03495: PS417_03495 - type III secretory protein EscS, at 801,954 to 802,217
_03495
PS417_03500: PS417_03500 - type III secretion system protein, at 802,228 to 803,016
_03500
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2 at 799.402 kb on + strand at 799.402 kb on + strand at 799.403 kb on - strand at 799.617 kb on + strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.800 kb on + strand at 799.800 kb on + strand at 800.096 kb on - strand, within PS417_03480 at 800.610 kb on + strand, within PS417_03485 at 800.722 kb on + strand, within PS417_03485 at 800.723 kb on - strand, within PS417_03485 at 800.994 kb on - strand, within PS417_03485 at 801.058 kb on + strand, within PS417_03485 at 801.103 kb on + strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.126 kb on - strand, within PS417_03485 at 801.204 kb on + strand at 801.204 kb on + strand at 801.204 kb on + strand at 801.247 kb on + strand at 801.636 kb on + strand, within PS417_03490 at 801.636 kb on + strand, within PS417_03490 at 801.637 kb on - strand, within PS417_03490 at 801.637 kb on - strand, within PS417_03490 at 801.780 kb on - strand, within PS417_03490 at 801.780 kb on - strand, within PS417_03490 at 801.938 kb on + strand at 802.075 kb on + strand, within PS417_03495 at 802.076 kb on - strand, within PS417_03495 at 802.076 kb on - strand, within PS417_03495 at 802.237 kb on + strand at 802.278 kb on + strand at 802.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM remove 799,402 + +0.2 799,402 + +0.0 799,403 - +0.3 799,617 + PS417_03475 0.50 -0.2 799,618 - PS417_03475 0.50 +0.0 799,618 - PS417_03475 0.50 +0.8 799,800 + -1.7 799,800 + -0.1 800,096 - PS417_03480 0.58 -0.7 800,610 + PS417_03485 0.32 -0.3 800,722 + PS417_03485 0.43 -0.0 800,723 - PS417_03485 0.43 +2.5 800,994 - PS417_03485 0.70 -1.8 801,058 + PS417_03485 0.76 -0.2 801,103 + PS417_03485 0.81 -0.3 801,104 - PS417_03485 0.81 -0.0 801,104 - PS417_03485 0.81 +0.2 801,104 - PS417_03485 0.81 -2.0 801,126 - PS417_03485 0.83 -0.7 801,204 + -0.5 801,204 + -0.1 801,204 + -0.6 801,247 + -0.1 801,636 + PS417_03490 0.52 -0.2 801,636 + PS417_03490 0.52 +0.1 801,637 - PS417_03490 0.53 -0.0 801,637 - PS417_03490 0.53 +0.2 801,780 - PS417_03490 0.74 +0.5 801,780 - PS417_03490 0.74 -0.7 801,938 + +0.0 802,075 + PS417_03495 0.46 +0.8 802,076 - PS417_03495 0.46 +1.2 802,076 - PS417_03495 0.46 +0.2 802,237 + -0.2 802,278 + -0.2 802,279 - +0.2
Or see this region's nucleotide sequence