Strain Fitness in Pseudomonas simiae WCS417 around PS417_13775

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13770 and PS417_13775 are separated by 196 nucleotidesPS417_13775 and PS417_13780 are separated by 129 nucleotides PS417_13770: PS417_13770 - major facilitator transporter, at 3,024,354 to 3,025,562 _13770 PS417_13775: PS417_13775 - dehydrogenase, at 3,025,759 to 3,026,616 _13775 PS417_13780: PS417_13780 - integrase, at 3,026,746 to 3,027,660 _13780 Position (kb) 3025 3026 3027Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3024.961 kb on - strand, within PS417_13770at 3024.961 kb on - strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.071 kb on + strand, within PS417_13770at 3025.465 kb on + strandat 3025.612 kb on + strandat 3025.638 kb on + strandat 3025.639 kb on - strandat 3025.645 kb on + strandat 3025.645 kb on + strandat 3025.645 kb on + strandat 3025.646 kb on - strandat 3025.646 kb on - strandat 3025.652 kb on - strandat 3025.701 kb on - strandat 3025.701 kb on - strandat 3025.701 kb on - strandat 3025.718 kb on + strandat 3025.719 kb on - strandat 3025.719 kb on - strandat 3025.722 kb on - strandat 3025.729 kb on + strandat 3025.747 kb on - strandat 3025.747 kb on - strandat 3025.747 kb on - strandat 3025.858 kb on + strand, within PS417_13775at 3025.975 kb on + strand, within PS417_13775at 3025.975 kb on + strand, within PS417_13775at 3026.256 kb on + strand, within PS417_13775at 3026.283 kb on + strand, within PS417_13775at 3026.284 kb on - strand, within PS417_13775at 3026.284 kb on - strand, within PS417_13775at 3026.284 kb on - strand, within PS417_13775at 3026.536 kb on + strandat 3026.536 kb on + strandat 3026.536 kb on + strandat 3026.537 kb on - strandat 3026.537 kb on - strandat 3026.537 kb on - strandat 3026.566 kb on + strandat 3026.566 kb on + strandat 3026.566 kb on + strandat 3026.566 kb on + strandat 3026.566 kb on + strandat 3026.567 kb on - strandat 3026.567 kb on - strandat 3026.567 kb on - strandat 3026.567 kb on - strandat 3026.568 kb on + strandat 3026.568 kb on + strandat 3026.569 kb on - strandat 3026.569 kb on - strandat 3026.569 kb on - strandat 3026.622 kb on - strandat 3026.622 kb on - strandat 3026.659 kb on - strandat 3026.665 kb on + strandat 3026.801 kb on + strandat 3026.801 kb on + strandat 3026.951 kb on + strand, within PS417_13780at 3026.954 kb on + strandat 3026.954 kb on + strand, within PS417_13780at 3027.108 kb on - strand, within PS417_13780at 3027.219 kb on - strand, within PS417_13780at 3027.219 kb on - strand, within PS417_13780at 3027.437 kb on + strand, within PS417_13780at 3027.439 kb on + strand, within PS417_13780at 3027.439 kb on + strand, within PS417_13780at 3027.440 kb on - strand, within PS417_13780

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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3,024,961 - PS417_13770 0.50 -0.8
3,024,961 - PS417_13770 0.50 +0.8
3,025,062 + PS417_13770 0.59 +0.1
3,025,062 + PS417_13770 0.59 +0.3
3,025,062 + PS417_13770 0.59 -1.1
3,025,071 + PS417_13770 0.59 -0.1
3,025,465 + -0.6
3,025,612 + -1.0
3,025,638 + -0.5
3,025,639 - -0.3
3,025,645 + -0.0
3,025,645 + -0.2
3,025,645 + +0.2
3,025,646 - -0.6
3,025,646 - -0.4
3,025,652 - +0.1
3,025,701 - -1.2
3,025,701 - -0.2
3,025,701 - -0.1
3,025,718 + -0.5
3,025,719 - -0.0
3,025,719 - -3.0
3,025,722 - -0.7
3,025,729 + -0.2
3,025,747 - -0.2
3,025,747 - +0.4
3,025,747 - +0.7
3,025,858 + PS417_13775 0.12 +0.4
3,025,975 + PS417_13775 0.25 -0.7
3,025,975 + PS417_13775 0.25 +3.6
3,026,256 + PS417_13775 0.58 +0.2
3,026,283 + PS417_13775 0.61 -0.2
3,026,284 - PS417_13775 0.61 -1.8
3,026,284 - PS417_13775 0.61 -0.3
3,026,284 - PS417_13775 0.61 +0.8
3,026,536 + -0.1
3,026,536 + +0.3
3,026,536 + +0.0
3,026,537 - -0.1
3,026,537 - -1.0
3,026,537 - -0.4
3,026,566 + -0.5
3,026,566 + +0.6
3,026,566 + -1.1
3,026,566 + +0.8
3,026,566 + +0.1
3,026,567 - -1.0
3,026,567 - -0.2
3,026,567 - -0.3
3,026,567 - +0.1
3,026,568 + +0.1
3,026,568 + +1.8
3,026,569 - -0.1
3,026,569 - -1.4
3,026,569 - -1.8
3,026,622 - -0.5
3,026,622 - -0.6
3,026,659 - +0.2
3,026,665 + -0.9
3,026,801 + +1.8
3,026,801 + -0.4
3,026,951 + PS417_13780 0.22 +0.8
3,026,954 + +1.2
3,026,954 + PS417_13780 0.23 +1.8
3,027,108 - PS417_13780 0.40 -2.5
3,027,219 - PS417_13780 0.52 -0.9
3,027,219 - PS417_13780 0.52 -1.0
3,027,437 + PS417_13780 0.76 -0.8
3,027,439 + PS417_13780 0.76 -1.4
3,027,439 + PS417_13780 0.76 -0.8
3,027,440 - PS417_13780 0.76 -0.3

Or see this region's nucleotide sequence