Strain Fitness in Pseudomonas simiae WCS417 around PS417_03290

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03280 and PS417_03285 overlap by 4 nucleotidesPS417_03285 and PS417_03290 overlap by 11 nucleotidesPS417_03290 and PS417_03295 are separated by 148 nucleotidesPS417_03295 and PS417_03300 overlap by 8 nucleotides PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223 _03280 PS417_03285: PS417_03285 - chromosome partitioning protein, at 754,220 to 754,927 _03285 PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194 _03290 PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128 _03295 PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573 _03300 Position (kb) 754 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1at 753.988 kb on + strandat 753.988 kb on + strandat 753.988 kb on + strandat 753.989 kb on - strandat 754.036 kb on + strandat 754.036 kb on + strandat 754.106 kb on + strandat 754.126 kb on + strandat 754.126 kb on + strandat 754.127 kb on - strandat 754.378 kb on + strand, within PS417_03285at 754.570 kb on - strand, within PS417_03285at 754.743 kb on + strand, within PS417_03285at 754.746 kb on + strand, within PS417_03285at 754.747 kb on - strand, within PS417_03285at 754.834 kb on - strand, within PS417_03285at 754.934 kb on + strandat 755.273 kb on - strand, within PS417_03290at 755.278 kb on + strand, within PS417_03290at 755.278 kb on + strand, within PS417_03290at 755.279 kb on - strand, within PS417_03290at 755.279 kb on - strand, within PS417_03290at 755.279 kb on - strand, within PS417_03290at 755.279 kb on - strand, within PS417_03290at 755.860 kb on + strand, within PS417_03290at 755.861 kb on - strand, within PS417_03290at 755.938 kb on + strand, within PS417_03290at 756.145 kb on - strandat 756.145 kb on - strandat 756.145 kb on - strandat 756.219 kb on + strandat 756.219 kb on + strandat 756.219 kb on + strandat 756.220 kb on - strandat 756.234 kb on + strandat 756.235 kb on - strandat 756.323 kb on + strandat 757.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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753,988 + -1.5
753,988 + -0.3
753,988 + -0.8
753,989 - -1.1
754,036 + -0.7
754,036 + -1.3
754,106 + -2.2
754,126 + -1.1
754,126 + -0.5
754,127 - -1.4
754,378 + PS417_03285 0.22 -0.7
754,570 - PS417_03285 0.49 -2.8
754,743 + PS417_03285 0.74 -1.2
754,746 + PS417_03285 0.74 +0.3
754,747 - PS417_03285 0.74 -1.1
754,834 - PS417_03285 0.87 -1.4
754,934 + -1.9
755,273 - PS417_03290 0.28 -1.5
755,278 + PS417_03290 0.28 -0.7
755,278 + PS417_03290 0.28 +0.8
755,279 - PS417_03290 0.28 -0.9
755,279 - PS417_03290 0.28 -1.6
755,279 - PS417_03290 0.28 +0.9
755,279 - PS417_03290 0.28 -1.6
755,860 + PS417_03290 0.74 -1.8
755,861 - PS417_03290 0.74 -1.2
755,938 + PS417_03290 0.80 -0.5
756,145 - -1.2
756,145 - +0.3
756,145 - +0.1
756,219 + -1.1
756,219 + +0.1
756,219 + -1.0
756,220 - -1.5
756,234 + -1.5
756,235 - -0.3
756,323 + -2.8
757,134 + -0.5

Or see this region's nucleotide sequence