Strain Fitness in Pseudomonas simiae WCS417 around PS417_03285
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
753,514 | + | PS417_03280 | 0.75 | +0.7 | |
753,514 | + | PS417_03280 | 0.75 | -0.2 | |
753,514 | + | PS417_03280 | 0.75 | +0.0 | |
753,534 | + | PS417_03280 | 0.76 | -0.8 | |
753,535 | - | PS417_03280 | 0.76 | -2.6 | |
753,535 | - | PS417_03280 | 0.76 | -1.5 | |
753,746 | + | PS417_03280 | 0.83 | -1.8 | |
753,794 | - | PS417_03280 | 0.85 | -0.1 | |
753,988 | + | -1.5 | |||
753,988 | + | -0.3 | |||
753,988 | + | -0.8 | |||
753,989 | - | -1.1 | |||
754,036 | + | -0.7 | |||
754,036 | + | -1.3 | |||
754,106 | + | -2.2 | |||
754,126 | + | -1.1 | |||
754,126 | + | -0.5 | |||
754,127 | - | -1.4 | |||
754,378 | + | PS417_03285 | 0.22 | -0.7 | |
754,570 | - | PS417_03285 | 0.49 | -2.8 | |
754,743 | + | PS417_03285 | 0.74 | -1.2 | |
754,746 | + | PS417_03285 | 0.74 | +0.3 | |
754,747 | - | PS417_03285 | 0.74 | -1.1 | |
754,834 | - | PS417_03285 | 0.87 | -1.4 | |
754,934 | + | -1.9 | |||
755,273 | - | PS417_03290 | 0.28 | -1.5 | |
755,278 | + | PS417_03290 | 0.28 | -0.7 | |
755,278 | + | PS417_03290 | 0.28 | +0.8 | |
755,279 | - | PS417_03290 | 0.28 | -0.9 | |
755,279 | - | PS417_03290 | 0.28 | -1.6 | |
755,279 | - | PS417_03290 | 0.28 | +0.9 | |
755,279 | - | PS417_03290 | 0.28 | -1.6 | |
755,860 | + | PS417_03290 | 0.74 | -1.8 | |
755,861 | - | PS417_03290 | 0.74 | -1.2 |
Or see this region's nucleotide sequence