Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25675 and PS417_25680 are separated by 63 nucleotides PS417_25680 and PS417_25685 are separated by 46 nucleotides PS417_25685 and PS417_25690 are separated by 116 nucleotides
PS417_25675: PS417_25675 - membrane protein, at 5,545,555 to 5,546,511
_25675
PS417_25680: PS417_25680 - short-chain dehydrogenase, at 5,546,575 to 5,547,363
_25680
PS417_25685: PS417_25685 - zinc-binding protein, at 5,547,410 to 5,547,748
_25685
PS417_25690: PS417_25690 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,547,865 to 5,548,512
_25690
Position (kb) 5546
5547
5548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5545.736 kb on - strand, within PS417_25675 at 5545.904 kb on - strand, within PS417_25675 at 5546.069 kb on + strand, within PS417_25675 at 5546.115 kb on - strand, within PS417_25675 at 5546.164 kb on + strand, within PS417_25675 at 5546.248 kb on + strand, within PS417_25675 at 5546.383 kb on - strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.395 kb on + strand, within PS417_25675 at 5546.492 kb on + strand at 5546.493 kb on - strand at 5547.028 kb on + strand at 5547.028 kb on + strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.032 kb on - strand at 5547.032 kb on - strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.349 kb on + strand at 5547.350 kb on - strand at 5547.373 kb on + strand at 5547.374 kb on - strand at 5547.394 kb on + strand at 5547.395 kb on - strand at 5547.447 kb on + strand, within PS417_25685 at 5547.447 kb on + strand, within PS417_25685 at 5547.448 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685 at 5547.577 kb on + strand, within PS417_25685 at 5547.578 kb on - strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.596 kb on - strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand at 5547.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 5,545,736 - PS417_25675 0.19 +0.3 5,545,904 - PS417_25675 0.36 -0.1 5,546,069 + PS417_25675 0.54 -0.5 5,546,115 - PS417_25675 0.59 -0.2 5,546,164 + PS417_25675 0.64 +0.7 5,546,248 + PS417_25675 0.72 -0.3 5,546,383 - PS417_25675 0.87 -0.4 5,546,395 + PS417_25675 0.88 -0.2 5,546,395 + PS417_25675 0.88 -1.0 5,546,395 + PS417_25675 0.88 -2.8 5,546,492 + -0.2 5,546,493 - -0.7 5,547,028 + +1.5 5,547,028 + PS417_25680 0.57 -0.8 5,547,029 - PS417_25680 0.58 -1.2 5,547,029 - PS417_25680 0.58 +0.9 5,547,032 - +0.5 5,547,032 - PS417_25680 0.58 -0.8 5,547,046 + PS417_25680 0.60 -1.0 5,547,046 + PS417_25680 0.60 -2.3 5,547,046 + PS417_25680 0.60 -1.5 5,547,047 - PS417_25680 0.60 -1.8 5,547,047 - PS417_25680 0.60 -0.9 5,547,047 - PS417_25680 0.60 -1.2 5,547,047 - PS417_25680 0.60 -1.5 5,547,217 + PS417_25680 0.81 -1.6 5,547,217 + PS417_25680 0.81 -1.0 5,547,218 - PS417_25680 0.81 -0.5 5,547,218 - PS417_25680 0.81 +1.0 5,547,349 + +0.2 5,547,350 - -0.1 5,547,373 + -0.2 5,547,374 - -1.3 5,547,394 + -1.3 5,547,395 - -0.0 5,547,447 + PS417_25685 0.11 +0.8 5,547,447 + PS417_25685 0.11 +0.6 5,547,448 - PS417_25685 0.11 -1.2 5,547,465 - PS417_25685 0.16 -0.0 5,547,465 - PS417_25685 0.16 -1.9 5,547,577 + PS417_25685 0.49 +0.0 5,547,578 - PS417_25685 0.50 -0.2 5,547,595 + PS417_25685 0.55 -2.2 5,547,595 + PS417_25685 0.55 +1.0 5,547,595 + PS417_25685 0.55 +0.0 5,547,595 + PS417_25685 0.55 +0.3 5,547,595 + PS417_25685 0.55 +0.4 5,547,596 - PS417_25685 0.55 +0.7 5,547,703 + PS417_25685 0.86 -0.8 5,547,703 + PS417_25685 0.86 -0.1 5,547,703 + PS417_25685 0.86 +0.4 5,547,704 - PS417_25685 0.87 +0.3 5,547,704 - PS417_25685 0.87 -0.5 5,547,704 - +2.9 5,547,763 + -1.4
Or see this region's nucleotide sequence