Strain Fitness in Pseudomonas simiae WCS417 around PS417_02350

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02345 and PS417_02350 are separated by 120 nucleotidesPS417_02350 and PS417_02355 are separated by 462 nucleotides PS417_02345: PS417_02345 - 3-deoxy-D-manno-octulosonic acid transferase, at 535,078 to 536,355 _02345 PS417_02350: PS417_02350 - channel protein TolC, at 536,476 to 537,915 _02350 PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270 _02355 Position (kb) 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2 3at 536.401 kb on + strandat 536.401 kb on + strandat 536.402 kb on - strandat 536.465 kb on - strandat 536.467 kb on - strandat 536.467 kb on - strandat 536.467 kb on - strandat 536.477 kb on + strandat 536.478 kb on - strandat 536.480 kb on + strandat 536.555 kb on + strandat 536.645 kb on + strand, within PS417_02350at 536.667 kb on - strand, within PS417_02350at 536.667 kb on - strand, within PS417_02350at 536.758 kb on + strand, within PS417_02350at 536.759 kb on - strand, within PS417_02350at 536.907 kb on - strand, within PS417_02350at 536.907 kb on - strand, within PS417_02350at 537.059 kb on + strand, within PS417_02350at 537.060 kb on - strand, within PS417_02350at 537.137 kb on + strand, within PS417_02350at 537.137 kb on + strand, within PS417_02350at 537.137 kb on + strand, within PS417_02350at 537.255 kb on - strand, within PS417_02350at 537.342 kb on - strand, within PS417_02350at 537.810 kb on - strandat 537.966 kb on - strandat 538.012 kb on + strandat 538.012 kb on + strandat 538.013 kb on - strandat 538.102 kb on + strandat 538.102 kb on + strandat 538.103 kb on - strandat 538.349 kb on + strandat 538.579 kb on + strandat 538.597 kb on + strand, within PS417_02355at 538.598 kb on - strand, within PS417_02355at 538.667 kb on + strand, within PS417_02355at 538.668 kb on - strand, within PS417_02355at 538.813 kb on + strand, within PS417_02355at 538.814 kb on - strand, within PS417_02355at 538.814 kb on - strand, within PS417_02355at 538.814 kb on - strand, within PS417_02355at 538.850 kb on - strand, within PS417_02355

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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536,401 + -0.3
536,401 + +0.7
536,402 - +1.0
536,465 - +1.0
536,467 - +0.1
536,467 - -0.2
536,467 - -1.0
536,477 + +0.2
536,478 - -0.3
536,480 + +0.5
536,555 + -1.5
536,645 + PS417_02350 0.12 -0.0
536,667 - PS417_02350 0.13 +0.1
536,667 - PS417_02350 0.13 -0.4
536,758 + PS417_02350 0.20 -0.3
536,759 - PS417_02350 0.20 -0.4
536,907 - PS417_02350 0.30 -0.8
536,907 - PS417_02350 0.30 +0.6
537,059 + PS417_02350 0.40 +0.2
537,060 - PS417_02350 0.41 -0.3
537,137 + PS417_02350 0.46 +0.2
537,137 + PS417_02350 0.46 +3.1
537,137 + PS417_02350 0.46 -0.0
537,255 - PS417_02350 0.54 -2.0
537,342 - PS417_02350 0.60 -0.4
537,810 - -1.4
537,966 - -0.4
538,012 + +0.6
538,012 + +0.7
538,013 - -1.2
538,102 + +0.2
538,102 + +0.6
538,103 - -0.3
538,349 + +1.3
538,579 + +0.6
538,597 + PS417_02355 0.12 -1.0
538,598 - PS417_02355 0.12 +0.7
538,667 + PS417_02355 0.15 -0.6
538,668 - PS417_02355 0.15 -0.7
538,813 + PS417_02355 0.23 +1.6
538,814 - PS417_02355 0.23 -0.6
538,814 - PS417_02355 0.23 -0.0
538,814 - PS417_02355 0.23 +0.5
538,850 - PS417_02355 0.25 +0.1

Or see this region's nucleotide sequence