Strain Fitness in Pseudomonas simiae WCS417 around PS417_22155

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22150 and PS417_22155 are separated by 115 nucleotidesPS417_22155 and PS417_22160 are separated by 114 nucleotides PS417_22150: PS417_22150 - D-mannose isomerase (EC 5.3.1.7) (from data), at 4,798,958 to 4,800,217 _22150 PS417_22155: PS417_22155 - ATPase, at 4,800,333 to 4,801,178 _22155 PS417_22160: PS417_22160 - 3-beta hydroxysteroid dehydrogenase, at 4,801,293 to 4,802,291 _22160 Position (kb) 4800 4801 4802Strain fitness (log2 ratio) -2 -1 0 1 2at 4799.579 kb on - strand, within PS417_22150at 4799.694 kb on + strand, within PS417_22150at 4799.776 kb on + strand, within PS417_22150at 4799.823 kb on - strand, within PS417_22150at 4799.865 kb on + strand, within PS417_22150at 4800.165 kb on + strandat 4800.257 kb on - strandat 4800.281 kb on + strandat 4800.282 kb on - strandat 4800.282 kb on - strandat 4800.414 kb on - strandat 4800.414 kb on - strandat 4800.453 kb on - strand, within PS417_22155at 4800.533 kb on + strand, within PS417_22155at 4801.163 kb on + strandat 4801.163 kb on + strandat 4801.180 kb on + strandat 4801.180 kb on + strandat 4801.180 kb on + strandat 4801.180 kb on + strandat 4801.180 kb on + strandat 4801.181 kb on - strandat 4801.181 kb on - strandat 4801.220 kb on + strandat 4801.221 kb on - strandat 4801.221 kb on - strandat 4801.295 kb on - strandat 4801.295 kb on - strandat 4801.372 kb on + strandat 4801.372 kb on + strandat 4801.511 kb on - strand, within PS417_22160at 4801.570 kb on + strand, within PS417_22160at 4801.570 kb on + strand, within PS417_22160at 4801.570 kb on + strand, within PS417_22160at 4801.571 kb on - strand, within PS417_22160at 4801.571 kb on - strand, within PS417_22160at 4801.619 kb on - strand, within PS417_22160at 4801.945 kb on + strand, within PS417_22160at 4801.946 kb on - strand, within PS417_22160at 4802.051 kb on - strand, within PS417_22160at 4802.051 kb on - strand, within PS417_22160at 4802.051 kb on - strand, within PS417_22160

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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4,799,579 - PS417_22150 0.49 -1.0
4,799,694 + PS417_22150 0.58 +0.3
4,799,776 + PS417_22150 0.65 +2.4
4,799,823 - PS417_22150 0.69 -0.4
4,799,865 + PS417_22150 0.72 -1.4
4,800,165 + -0.3
4,800,257 - -0.1
4,800,281 + -1.1
4,800,282 - +0.4
4,800,282 - -0.3
4,800,414 - +0.2
4,800,414 - +1.2
4,800,453 - PS417_22155 0.14 -1.1
4,800,533 + PS417_22155 0.24 -0.8
4,801,163 + -1.3
4,801,163 + -0.2
4,801,180 + -0.6
4,801,180 + -0.3
4,801,180 + -0.4
4,801,180 + -0.3
4,801,180 + -2.2
4,801,181 - -0.2
4,801,181 - -0.2
4,801,220 + +2.0
4,801,221 - +0.0
4,801,221 - +0.7
4,801,295 - +0.7
4,801,295 - +1.4
4,801,372 + -0.7
4,801,372 + -1.2
4,801,511 - PS417_22160 0.22 +0.4
4,801,570 + PS417_22160 0.28 -1.0
4,801,570 + PS417_22160 0.28 -0.6
4,801,570 + PS417_22160 0.28 -0.3
4,801,571 - PS417_22160 0.28 -1.3
4,801,571 - PS417_22160 0.28 -0.4
4,801,619 - PS417_22160 0.33 -1.4
4,801,945 + PS417_22160 0.65 -0.6
4,801,946 - PS417_22160 0.65 -0.9
4,802,051 - PS417_22160 0.76 -0.5
4,802,051 - PS417_22160 0.76 +0.4
4,802,051 - PS417_22160 0.76 -1.1

Or see this region's nucleotide sequence