Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20870 and PS417_20875 are separated by 259 nucleotides PS417_20875 and PS417_20880 are separated by 2 nucleotides PS417_20880 and PS417_20885 are separated by 280 nucleotides
PS417_20870: PS417_20870 - cell division protein ZipA, at 4,533,661 to 4,534,524
_20870
PS417_20875: PS417_20875 - chromosome segregation protein SMC, at 4,534,784 to 4,538,272
_20875
PS417_20880: PS417_20880 - GntR family transcriptional regulator, at 4,538,275 to 4,538,934
_20880
PS417_20885: PS417_20885 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 4,539,215 to 4,540,663
_20885
Position (kb)
4534
4535
4536
4537
4538
4539 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4534.590 kb on - strand at 4534.710 kb on - strand at 4535.173 kb on - strand, within PS417_20875 at 4535.224 kb on + strand, within PS417_20875 at 4535.225 kb on - strand, within PS417_20875 at 4535.344 kb on + strand, within PS417_20875 at 4537.392 kb on + strand, within PS417_20875 at 4537.392 kb on + strand, within PS417_20875 at 4537.621 kb on - strand, within PS417_20875 at 4537.755 kb on + strand, within PS417_20875 at 4537.790 kb on - strand, within PS417_20875 at 4537.790 kb on - strand, within PS417_20875 at 4537.929 kb on + strand at 4537.929 kb on + strand at 4537.930 kb on - strand at 4537.930 kb on - strand at 4538.442 kb on - strand, within PS417_20880 at 4538.666 kb on + strand, within PS417_20880 at 4538.666 kb on + strand, within PS417_20880 at 4538.962 kb on - strand at 4538.978 kb on - strand at 4539.090 kb on + strand at 4539.091 kb on - strand at 4539.165 kb on - strand at 4539.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 4,534,590 - +0.3 4,534,710 - -0.7 4,535,173 - PS417_20875 0.11 -1.5 4,535,224 + PS417_20875 0.13 -3.2 4,535,225 - PS417_20875 0.13 -0.1 4,535,344 + PS417_20875 0.16 +0.8 4,537,392 + PS417_20875 0.75 -1.0 4,537,392 + PS417_20875 0.75 -1.0 4,537,621 - PS417_20875 0.81 -0.5 4,537,755 + PS417_20875 0.85 -1.6 4,537,790 - PS417_20875 0.86 -1.6 4,537,790 - PS417_20875 0.86 -0.2 4,537,929 + -0.7 4,537,929 + -1.7 4,537,930 - -1.4 4,537,930 - -1.1 4,538,442 - PS417_20880 0.25 -0.5 4,538,666 + PS417_20880 0.59 -1.8 4,538,666 + PS417_20880 0.59 -1.7 4,538,962 - +0.8 4,538,978 - +0.0 4,539,090 + -0.1 4,539,091 - -0.2 4,539,165 - +1.3 4,539,193 + -0.4
Or see this region's nucleotide sequence