Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19555 and PS417_19560 are separated by 42 nucleotides PS417_19560 and PS417_19565 are separated by 94 nucleotides PS417_19565 and PS417_19570 are separated by 153 nucleotides
PS417_19555: PS417_19555 - RNA polymerase sigma70, at 4,253,491 to 4,254,042
_19555
PS417_19560: PS417_19560 - amino acid ABC transporter substrate-binding protein, at 4,254,085 to 4,254,873
_19560
PS417_19565: PS417_19565 - TetR family transcriptional regulator, at 4,254,968 to 4,255,591
_19565
PS417_19570: PS417_19570 - terpene utilization protein AtuA, at 4,255,745 to 4,257,523
_19570
Position (kb)
4254
4255
4256 Strain fitness (log2 ratio)
-1
0
1 at 4254.022 kb on - strand at 4254.033 kb on + strand at 4254.033 kb on + strand at 4254.053 kb on + strand at 4254.054 kb on - strand at 4254.054 kb on - strand at 4254.113 kb on + strand at 4254.224 kb on + strand, within PS417_19560 at 4254.224 kb on + strand, within PS417_19560 at 4254.224 kb on + strand, within PS417_19560 at 4254.225 kb on - strand, within PS417_19560 at 4254.225 kb on - strand, within PS417_19560 at 4254.225 kb on - strand, within PS417_19560 at 4254.285 kb on + strand, within PS417_19560 at 4254.285 kb on + strand, within PS417_19560 at 4254.299 kb on + strand, within PS417_19560 at 4254.300 kb on - strand, within PS417_19560 at 4254.368 kb on + strand, within PS417_19560 at 4254.368 kb on + strand, within PS417_19560 at 4254.369 kb on - strand, within PS417_19560 at 4254.401 kb on + strand, within PS417_19560 at 4254.401 kb on + strand, within PS417_19560 at 4254.401 kb on + strand, within PS417_19560 at 4254.402 kb on - strand, within PS417_19560 at 4254.402 kb on - strand, within PS417_19560 at 4254.664 kb on + strand, within PS417_19560 at 4254.755 kb on + strand, within PS417_19560 at 4254.954 kb on + strand at 4255.095 kb on - strand at 4255.110 kb on + strand, within PS417_19565 at 4255.136 kb on + strand, within PS417_19565 at 4255.137 kb on - strand, within PS417_19565 at 4255.159 kb on - strand, within PS417_19565 at 4255.347 kb on + strand, within PS417_19565 at 4255.348 kb on - strand, within PS417_19565 at 4255.633 kb on + strand at 4256.181 kb on - strand, within PS417_19570 at 4256.309 kb on + strand, within PS417_19570 at 4256.345 kb on - strand, within PS417_19570 at 4256.345 kb on - strand, within PS417_19570 at 4256.345 kb on - strand, within PS417_19570 at 4256.368 kb on + strand, within PS417_19570 at 4256.433 kb on + strand, within PS417_19570 at 4256.434 kb on - strand, within PS417_19570 at 4256.549 kb on + strand, within PS417_19570
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 4,254,022 - -0.1 4,254,033 + -0.0 4,254,033 + -1.1 4,254,053 + -0.6 4,254,054 - -0.4 4,254,054 - +0.2 4,254,113 + +0.5 4,254,224 + PS417_19560 0.18 +1.2 4,254,224 + PS417_19560 0.18 -1.6 4,254,224 + PS417_19560 0.18 +0.2 4,254,225 - PS417_19560 0.18 -0.8 4,254,225 - PS417_19560 0.18 -0.2 4,254,225 - PS417_19560 0.18 +0.7 4,254,285 + PS417_19560 0.25 +0.5 4,254,285 + PS417_19560 0.25 +0.2 4,254,299 + PS417_19560 0.27 +1.4 4,254,300 - PS417_19560 0.27 +0.2 4,254,368 + PS417_19560 0.36 -0.2 4,254,368 + PS417_19560 0.36 +0.3 4,254,369 - PS417_19560 0.36 +1.4 4,254,401 + PS417_19560 0.40 -1.4 4,254,401 + PS417_19560 0.40 +0.5 4,254,401 + PS417_19560 0.40 +1.2 4,254,402 - PS417_19560 0.40 +0.5 4,254,402 - PS417_19560 0.40 -0.0 4,254,664 + PS417_19560 0.73 -0.0 4,254,755 + PS417_19560 0.85 +0.4 4,254,954 + +0.9 4,255,095 - -0.4 4,255,110 + PS417_19565 0.23 -0.0 4,255,136 + PS417_19565 0.27 -1.0 4,255,137 - PS417_19565 0.27 -0.7 4,255,159 - PS417_19565 0.31 -0.4 4,255,347 + PS417_19565 0.61 -1.4 4,255,348 - PS417_19565 0.61 -1.1 4,255,633 + -0.9 4,256,181 - PS417_19570 0.25 -0.5 4,256,309 + PS417_19570 0.32 -0.3 4,256,345 - PS417_19570 0.34 +1.2 4,256,345 - PS417_19570 0.34 +0.3 4,256,345 - PS417_19570 0.34 -0.6 4,256,368 + PS417_19570 0.35 +0.1 4,256,433 + PS417_19570 0.39 +1.0 4,256,434 - PS417_19570 0.39 -0.1 4,256,549 + PS417_19570 0.45 +0.9
Or see this region's nucleotide sequence