Strain Fitness in Pseudomonas simiae WCS417 around PS417_16130
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,537,382 | - | PS417_16125 | 0.53 | +0.9 | |
3,537,382 | - | PS417_16125 | 0.53 | -0.1 | |
3,537,385 | + | PS417_16125 | 0.54 | -0.0 | |
3,537,386 | - | -0.9 | |||
3,537,403 | + | PS417_16125 | 0.55 | +1.9 | |
3,537,403 | + | PS417_16125 | 0.55 | +0.3 | |
3,537,403 | + | PS417_16125 | 0.55 | +0.1 | |
3,537,511 | + | +2.1 | |||
3,537,511 | + | PS417_16125 | 0.67 | +0.1 | |
3,537,618 | + | PS417_16125 | 0.78 | +1.2 | |
3,538,205 | + | PS417_16130 | 0.27 | +0.5 | |
3,538,205 | + | PS417_16130 | 0.27 | -1.3 | |
3,538,205 | + | PS417_16130 | 0.27 | -0.1 | |
3,538,206 | - | PS417_16130 | 0.28 | +0.3 | |
3,538,565 | + | PS417_16130 | 0.77 | +0.5 | |
3,538,565 | + | PS417_16130 | 0.77 | +1.1 | |
3,538,565 | + | PS417_16130 | 0.77 | -0.2 | |
3,538,565 | + | PS417_16130 | 0.77 | -0.4 | |
3,538,566 | - | PS417_16130 | 0.77 | +0.2 | |
3,538,566 | - | PS417_16130 | 0.77 | +1.2 | |
3,538,852 | + | +0.1 | |||
3,539,061 | - | PS417_16135 | 0.48 | +0.5 | |
3,539,325 | - | -0.2 | |||
3,539,391 | + | +0.4 | |||
3,539,391 | + | -0.0 | |||
3,539,391 | + | -0.0 | |||
3,539,392 | - | -0.4 | |||
3,539,399 | - | +2.6 | |||
3,539,475 | + | +2.1 | |||
3,539,663 | - | PS417_16140 | 0.31 | +0.1 |
Or see this region's nucleotide sequence