Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16120 and PS417_16125 are separated by 95 nucleotides PS417_16125 and PS417_16130 are separated by 180 nucleotides
PS417_16120: PS417_16120 - transcriptional regulator, at 3,535,257 to 3,536,780
_16120
PS417_16125: PS417_16125 - AraC family transcriptional regulator, at 3,536,876 to 3,537,826
_16125
PS417_16130: PS417_16130 - quercetin 2,3-dioxygenase, at 3,538,007 to 3,538,729
_16130
Position (kb)
3536
3537
3538 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3536.322 kb on + strand, within PS417_16120 at 3536.455 kb on + strand, within PS417_16120 at 3536.455 kb on + strand, within PS417_16120 at 3536.456 kb on - strand, within PS417_16120 at 3536.674 kb on + strand at 3536.674 kb on + strand at 3536.675 kb on - strand at 3536.733 kb on - strand at 3536.793 kb on - strand at 3537.382 kb on - strand, within PS417_16125 at 3537.382 kb on - strand, within PS417_16125 at 3537.385 kb on + strand, within PS417_16125 at 3537.386 kb on - strand at 3537.403 kb on + strand, within PS417_16125 at 3537.403 kb on + strand, within PS417_16125 at 3537.403 kb on + strand, within PS417_16125 at 3537.511 kb on + strand at 3537.511 kb on + strand, within PS417_16125 at 3537.618 kb on + strand, within PS417_16125 at 3538.205 kb on + strand, within PS417_16130 at 3538.205 kb on + strand, within PS417_16130 at 3538.205 kb on + strand, within PS417_16130 at 3538.206 kb on - strand, within PS417_16130 at 3538.565 kb on + strand, within PS417_16130 at 3538.565 kb on + strand, within PS417_16130 at 3538.565 kb on + strand, within PS417_16130 at 3538.565 kb on + strand, within PS417_16130 at 3538.566 kb on - strand, within PS417_16130 at 3538.566 kb on - strand, within PS417_16130
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 3,536,322 + PS417_16120 0.70 +0.9 3,536,455 + PS417_16120 0.79 -1.3 3,536,455 + PS417_16120 0.79 +1.3 3,536,456 - PS417_16120 0.79 +0.6 3,536,674 + +0.6 3,536,674 + -0.2 3,536,675 - +0.2 3,536,733 - +1.1 3,536,793 - -1.9 3,537,382 - PS417_16125 0.53 +0.9 3,537,382 - PS417_16125 0.53 -0.1 3,537,385 + PS417_16125 0.54 -0.0 3,537,386 - -0.9 3,537,403 + PS417_16125 0.55 +1.9 3,537,403 + PS417_16125 0.55 +0.3 3,537,403 + PS417_16125 0.55 +0.1 3,537,511 + +2.1 3,537,511 + PS417_16125 0.67 +0.1 3,537,618 + PS417_16125 0.78 +1.2 3,538,205 + PS417_16130 0.27 +0.5 3,538,205 + PS417_16130 0.27 -1.3 3,538,205 + PS417_16130 0.27 -0.1 3,538,206 - PS417_16130 0.28 +0.3 3,538,565 + PS417_16130 0.77 +0.5 3,538,565 + PS417_16130 0.77 +1.1 3,538,565 + PS417_16130 0.77 -0.2 3,538,565 + PS417_16130 0.77 -0.4 3,538,566 - PS417_16130 0.77 +0.2 3,538,566 - PS417_16130 0.77 +1.2
Or see this region's nucleotide sequence