Strain Fitness in Pseudomonas simiae WCS417 around PS417_00015

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00010 and PS417_00015 are separated by 20 nucleotidesPS417_00015 and PS417_00020 are separated by 4 nucleotides PS417_00010: PS417_00010 - DNA polymerase III subunit beta, at 1,781 to 2,884 _00010 PS417_00015: PS417_00015 - recombinase RecF, at 2,905 to 4,008 _00015 PS417_00020: PS417_00020 - DNA gyrase subunit B, at 4,013 to 6,430 _00020 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2.902 kb on + strandat 2.902 kb on + strandat 2.902 kb on + strandat 2.903 kb on - strandat 2.903 kb on - strandat 3.147 kb on + strand, within PS417_00015at 3.148 kb on - strand, within PS417_00015at 3.148 kb on - strand, within PS417_00015at 3.473 kb on + strand, within PS417_00015at 3.473 kb on + strand, within PS417_00015at 3.493 kb on + strand, within PS417_00015at 3.493 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.684 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.805 kb on + strand, within PS417_00015at 3.878 kb on + strand, within PS417_00015at 3.878 kb on + strand, within PS417_00015at 3.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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2,902 + -3.0
2,902 + -3.5
2,902 + -4.1
2,903 - -1.6
2,903 - -6.4
3,147 + PS417_00015 0.22 -4.8
3,148 - PS417_00015 0.22 -1.9
3,148 - PS417_00015 0.22 -0.0
3,473 + PS417_00015 0.51 -5.2
3,473 + PS417_00015 0.51 -2.4
3,493 + PS417_00015 0.53 -1.0
3,493 + PS417_00015 0.53 -4.4
3,495 + PS417_00015 0.53 -2.1
3,495 + PS417_00015 0.53 -4.1
3,495 + PS417_00015 0.53 -3.1
3,684 + PS417_00015 0.71 -1.8
3,801 + PS417_00015 0.81 -5.0
3,801 + PS417_00015 0.81 -1.3
3,801 + PS417_00015 0.81 -3.2
3,801 + PS417_00015 0.81 -2.0
3,805 + PS417_00015 0.82 -0.8
3,878 + PS417_00015 0.88 -3.3
3,878 + PS417_00015 0.88 -1.8
3,917 + -2.0

Or see this region's nucleotide sequence