Strain Fitness in Pseudomonas simiae WCS417 around PS417_15120
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,306,704 | - | PS417_15115 | 0.38 | -5.5 | |
3,306,704 | - | PS417_15115 | 0.38 | -1.0 | |
3,307,289 | - | PS417_15115 | 0.85 | -4.5 | |
3,307,391 | - | -4.8 | |||
3,307,905 | + | PS417_15120 | 0.12 | -3.6 | |
3,308,055 | + | -0.0 | |||
3,308,111 | + | PS417_15120 | 0.18 | -0.8 | |
3,308,119 | + | PS417_15120 | 0.18 | -0.6 | |
3,308,120 | - | PS417_15120 | 0.18 | -4.4 | |
3,308,483 | + | PS417_15120 | 0.28 | -2.0 | |
3,308,830 | + | PS417_15120 | 0.37 | -2.2 | |
3,308,986 | + | PS417_15120 | 0.42 | -4.2 | |
3,309,309 | + | PS417_15120 | 0.51 | -3.9 | |
3,309,456 | + | PS417_15120 | 0.55 | -3.9 | |
3,309,457 | - | PS417_15120 | 0.55 | -4.4 | |
3,309,457 | - | PS417_15120 | 0.55 | -1.6 | |
3,309,528 | + | PS417_15120 | 0.57 | -4.5 | |
3,311,026 | + | -3.3 | |||
3,311,123 | + | -0.6 | |||
3,311,123 | + | -0.2 | |||
3,311,124 | - | -1.1 | |||
3,311,349 | + | PS417_15125 | 0.41 | +0.1 | |
3,311,409 | - | PS417_15125 | 0.51 | -0.0 | |
3,311,526 | - | PS417_15125 | 0.71 | -0.1 | |
3,311,696 | + | +0.4 | |||
3,311,784 | - | +0.7 | |||
3,312,047 | + | PS417_15135 | 0.37 | +2.2 | |
3,312,048 | - | PS417_15135 | 0.38 | -0.8 |
Or see this region's nucleotide sequence