Strain Fitness in Pseudomonas simiae WCS417 around PS417_14300

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14295 and PS417_14300 are separated by 187 nucleotidesPS417_14300 and PS417_14305 are separated by 14 nucleotidesPS417_14305 and PS417_14310 are separated by 42 nucleotides PS417_14295: PS417_14295 - AraC family transcriptional regulator, at 3,128,638 to 3,129,396 _14295 PS417_14300: PS417_14300 - aspartate:proton symporter, at 3,129,584 to 3,131,203 _14300 PS417_14305: PS417_14305 - hydroxyproline-2-epimerase, at 3,131,218 to 3,132,144 _14305 PS417_14310: PS417_14310 - dihydrodipicolinate synthetase, at 3,132,187 to 3,133,134 _14310 Position (kb) 3129 3130 3131 3132Strain fitness (log2 ratio) -1 0 1at 3129.026 kb on + strand, within PS417_14295at 3129.027 kb on - strand, within PS417_14295at 3129.313 kb on + strand, within PS417_14295at 3129.314 kb on - strand, within PS417_14295at 3129.334 kb on + strandat 3129.334 kb on + strandat 3129.335 kb on - strandat 3129.538 kb on + strandat 3129.583 kb on + strandat 3129.583 kb on + strandat 3129.583 kb on + strandat 3129.767 kb on + strand, within PS417_14300at 3129.768 kb on - strand, within PS417_14300at 3129.921 kb on - strand, within PS417_14300at 3130.075 kb on - strand, within PS417_14300at 3130.217 kb on + strand, within PS417_14300at 3130.323 kb on - strand, within PS417_14300at 3130.458 kb on - strand, within PS417_14300at 3130.509 kb on - strand, within PS417_14300at 3130.509 kb on - strand, within PS417_14300at 3130.509 kb on - strand, within PS417_14300at 3130.509 kb on - strand, within PS417_14300at 3130.536 kb on - strand, within PS417_14300at 3130.536 kb on - strand, within PS417_14300at 3130.536 kb on - strandat 3130.899 kb on - strand, within PS417_14300at 3131.058 kb on + strandat 3131.087 kb on + strandat 3131.390 kb on + strand, within PS417_14305at 3131.407 kb on + strandat 3131.677 kb on + strand, within PS417_14305at 3131.908 kb on + strandat 3132.034 kb on + strand, within PS417_14305at 3132.082 kb on + strandat 3132.083 kb on - strandat 3132.160 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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3,129,026 + PS417_14295 0.51 -0.3
3,129,027 - PS417_14295 0.51 +0.4
3,129,313 + PS417_14295 0.89 +1.2
3,129,314 - PS417_14295 0.89 -0.2
3,129,334 + -0.0
3,129,334 + -0.0
3,129,335 - -0.6
3,129,538 + -0.5
3,129,583 + -0.2
3,129,583 + +0.6
3,129,583 + +0.2
3,129,767 + PS417_14300 0.11 -0.6
3,129,768 - PS417_14300 0.11 -1.2
3,129,921 - PS417_14300 0.21 -1.2
3,130,075 - PS417_14300 0.30 +1.4
3,130,217 + PS417_14300 0.39 -0.9
3,130,323 - PS417_14300 0.46 -0.0
3,130,458 - PS417_14300 0.54 -1.0
3,130,509 - PS417_14300 0.57 +1.4
3,130,509 - PS417_14300 0.57 -1.3
3,130,509 - PS417_14300 0.57 +0.1
3,130,509 - PS417_14300 0.57 -1.2
3,130,536 - PS417_14300 0.59 -0.0
3,130,536 - PS417_14300 0.59 -0.6
3,130,536 - -1.0
3,130,899 - PS417_14300 0.81 -0.4
3,131,058 + -0.6
3,131,087 + +0.6
3,131,390 + PS417_14305 0.19 -0.0
3,131,407 + -0.0
3,131,677 + PS417_14305 0.50 -0.2
3,131,908 + -1.0
3,132,034 + PS417_14305 0.88 +0.1
3,132,082 + -0.0
3,132,083 - -0.8
3,132,160 + -0.0

Or see this region's nucleotide sequence