Strain Fitness in Pseudomonas simiae WCS417 around PS417_13490
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,972,244 | + | PS417_13485 | 0.49 | -0.5 | |
2,972,245 | - | PS417_13485 | 0.49 | -0.3 | |
2,972,245 | - | PS417_13485 | 0.49 | -0.4 | |
2,972,254 | - | PS417_13485 | 0.50 | -0.5 | |
2,972,400 | - | PS417_13485 | 0.60 | +0.1 | |
2,972,603 | + | PS417_13485 | 0.75 | +1.2 | |
2,972,651 | + | PS417_13485 | 0.78 | -0.2 | |
2,972,651 | + | PS417_13485 | 0.78 | -0.2 | |
2,972,831 | - | -1.3 | |||
2,972,843 | - | +0.0 | |||
2,972,994 | + | +0.7 | |||
2,973,122 | + | PS417_13490 | 0.54 | -0.6 | |
2,973,123 | - | PS417_13490 | 0.54 | -1.2 | |
2,973,337 | + | +0.7 | |||
2,973,337 | + | +1.3 | |||
2,973,338 | - | -1.0 | |||
2,973,342 | - | -1.3 | |||
2,973,342 | - | -0.9 | |||
2,973,342 | - | +0.0 | |||
2,973,439 | + | -3.2 | |||
2,973,439 | + | -5.1 | |||
2,973,443 | - | -1.3 | |||
2,973,443 | - | -2.6 | |||
2,973,619 | + | PS417_13495 | 0.13 | -2.2 | |
2,973,619 | + | PS417_13495 | 0.13 | +0.0 | |
2,973,620 | - | PS417_13495 | 0.13 | +0.8 | |
2,973,693 | - | PS417_13495 | 0.17 | -4.7 | |
2,973,869 | - | PS417_13495 | 0.28 | -3.3 | |
2,973,970 | + | PS417_13495 | 0.34 | -1.3 | |
2,973,970 | + | PS417_13495 | 0.34 | -2.9 | |
2,973,970 | + | PS417_13495 | 0.34 | +0.6 | |
2,973,971 | - | PS417_13495 | 0.34 | -2.2 | |
2,974,122 | + | PS417_13495 | 0.43 | -1.5 |
Or see this region's nucleotide sequence