Strain Fitness in Pseudomonas simiae WCS417 around PS417_13130

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13125 and PS417_13130 are separated by 3 nucleotidesPS417_13130 and PS417_13135 are separated by 184 nucleotidesPS417_13135 and PS417_13140 are separated by 12 nucleotides PS417_13125: PS417_13125 - ATP-dependent DNA ligase, at 2,867,556 to 2,870,015 _13125 PS417_13130: PS417_13130 - DNA repair protein, at 2,870,019 to 2,870,852 _13130 PS417_13135: PS417_13135 - hypothetical protein, at 2,871,037 to 2,871,351 _13135 PS417_13140: PS417_13140 - oxidoreductase, at 2,871,364 to 2,872,521 _13140 Position (kb) 2870 2871Strain fitness (log2 ratio) -2 -1 0 1 2at 2869.100 kb on - strand, within PS417_13125at 2869.100 kb on - strand, within PS417_13125at 2869.501 kb on + strand, within PS417_13125at 2869.756 kb on + strand, within PS417_13125at 2869.757 kb on - strand, within PS417_13125at 2869.757 kb on - strand, within PS417_13125at 2869.846 kb on - strandat 2869.873 kb on + strandat 2869.874 kb on - strandat 2869.993 kb on + strandat 2870.021 kb on - strandat 2870.485 kb on + strand, within PS417_13130at 2870.809 kb on - strandat 2870.852 kb on + strandat 2870.852 kb on + strandat 2870.853 kb on - strandat 2870.867 kb on - strandat 2870.942 kb on + strandat 2870.942 kb on + strandat 2870.963 kb on + strandat 2870.990 kb on - strandat 2871.011 kb on - strandat 2871.093 kb on + strand, within PS417_13135at 2871.093 kb on + strandat 2871.264 kb on + strand, within PS417_13135at 2871.264 kb on + strand, within PS417_13135at 2871.268 kb on + strand, within PS417_13135at 2871.269 kb on - strand, within PS417_13135at 2871.325 kb on + strandat 2871.325 kb on + strandat 2871.326 kb on - strandat 2871.326 kb on - strandat 2871.326 kb on - strandat 2871.372 kb on - strandat 2871.701 kb on - strand, within PS417_13140at 2871.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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2,869,100 - PS417_13125 0.63 -0.6
2,869,100 - PS417_13125 0.63 +0.7
2,869,501 + PS417_13125 0.79 +1.5
2,869,756 + PS417_13125 0.89 -0.8
2,869,757 - PS417_13125 0.89 -0.4
2,869,757 - PS417_13125 0.89 +1.7
2,869,846 - -0.1
2,869,873 + +0.3
2,869,874 - +1.8
2,869,993 + +0.5
2,870,021 - -0.3
2,870,485 + PS417_13130 0.56 +0.5
2,870,809 - +0.6
2,870,852 + +0.5
2,870,852 + -0.6
2,870,853 - +0.1
2,870,867 - +1.2
2,870,942 + +1.0
2,870,942 + +0.2
2,870,963 + +0.7
2,870,990 - +0.3
2,871,011 - -0.6
2,871,093 + PS417_13135 0.18 +2.6
2,871,093 + -0.0
2,871,264 + PS417_13135 0.72 -0.3
2,871,264 + PS417_13135 0.72 -0.0
2,871,268 + PS417_13135 0.73 +0.0
2,871,269 - PS417_13135 0.74 +0.6
2,871,325 + -0.7
2,871,325 + +0.2
2,871,326 - +0.6
2,871,326 - -2.7
2,871,326 - -0.3
2,871,372 - +0.3
2,871,701 - PS417_13140 0.29 +0.3
2,871,701 - -0.3

Or see this region's nucleotide sequence