Strain Fitness in Pseudomonas simiae WCS417 around PS417_12590
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,740,063 | - | PS417_12585 | 0.69 | +1.2 | |
2,740,158 | - | PS417_12585 | 0.72 | +0.3 | |
2,740,206 | + | PS417_12585 | 0.73 | -0.8 | |
2,740,497 | + | PS417_12585 | 0.83 | +1.5 | |
2,740,798 | - | +1.4 | |||
2,740,882 | - | +1.8 | |||
2,740,884 | - | +0.8 | |||
2,740,890 | + | +2.4 | |||
2,741,012 | - | +2.5 | |||
2,742,276 | + | -0.2 | |||
2,742,276 | + | +0.4 | |||
2,742,277 | - | +2.0 | |||
2,742,292 | + | -0.1 | |||
2,742,292 | + | -0.1 | |||
2,742,293 | - | -0.0 | |||
2,742,293 | - | +1.6 | |||
2,742,293 | - | -0.6 | |||
2,742,293 | - | -0.0 | |||
2,742,295 | - | +1.0 | |||
2,742,361 | + | +1.0 | |||
2,742,757 | + | PS417_12595 | 0.42 | -0.1 | |
2,742,940 | + | PS417_12595 | 0.68 | -2.4 | |
2,743,132 | + | -2.0 |
Or see this region's nucleotide sequence