Strain Fitness in Pseudomonas simiae WCS417 around PS417_12050
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,616,371 | + | PS417_12045 | 0.14 | +2.8 | |
2,616,371 | + | PS417_12045 | 0.14 | -0.2 | |
2,616,372 | - | PS417_12045 | 0.14 | -0.2 | |
2,616,544 | - | PS417_12045 | 0.29 | -0.9 | |
2,616,881 | + | PS417_12045 | 0.59 | +0.2 | |
2,616,881 | + | PS417_12045 | 0.59 | -0.2 | |
2,616,881 | + | PS417_12045 | 0.59 | +0.4 | |
2,617,365 | - | -0.3 | |||
2,617,436 | + | -2.2 | |||
2,617,436 | + | +0.4 | |||
2,617,607 | - | PS417_12050 | 0.32 | -0.2 | |
2,617,646 | + | PS417_12050 | 0.37 | -0.3 | |
2,617,853 | + | PS417_12050 | 0.65 | -0.4 | |
2,617,854 | - | PS417_12050 | 0.65 | -0.9 | |
2,617,900 | + | PS417_12050 | 0.71 | -1.1 | |
2,617,901 | - | PS417_12050 | 0.71 | -0.3 | |
2,618,123 | - | -2.0 | |||
2,618,232 | - | -0.2 | |||
2,618,232 | - | +0.6 | |||
2,618,279 | + | +0.0 | |||
2,618,351 | + | PS417_12055 | 0.14 | -0.4 | |
2,618,352 | - | PS417_12055 | 0.14 | +0.4 | |
2,618,352 | - | PS417_12055 | 0.14 | -0.3 | |
2,618,831 | + | PS417_12055 | 0.62 | -0.6 | |
2,618,954 | + | PS417_12055 | 0.74 | +0.8 | |
2,619,005 | + | PS417_12055 | 0.79 | -2.6 | |
2,619,005 | + | PS417_12055 | 0.79 | +0.4 | |
2,619,006 | - | PS417_12055 | 0.79 | +0.7 | |
2,619,006 | - | PS417_12055 | 0.79 | -0.1 |
Or see this region's nucleotide sequence