Strain Fitness in Pseudomonas simiae WCS417 around PS417_11485
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,470,168 | + | PS417_11475 | 0.52 | +0.5 | |
2,470,168 | + | PS417_11475 | 0.52 | +0.1 | |
2,470,169 | - | PS417_11475 | 0.53 | -0.4 | |
2,470,169 | - | PS417_11475 | 0.53 | +1.1 | |
2,470,675 | - | -0.1 | |||
2,470,703 | - | PS417_11480 | 0.11 | +0.5 | |
2,470,730 | + | +2.1 | |||
2,470,731 | - | PS417_11480 | 0.21 | +0.2 | |
2,470,788 | - | PS417_11480 | 0.42 | +0.9 | |
2,470,902 | + | PS417_11480 | 0.84 | +0.5 | |
2,470,998 | + | +0.1 | |||
2,470,999 | - | +0.3 | |||
2,471,057 | - | +1.1 | |||
2,471,159 | - | +1.1 | |||
2,471,173 | + | PS417_11485 | 0.11 | -0.6 | |
2,471,347 | + | PS417_11485 | 0.33 | -0.2 | |
2,471,347 | + | PS417_11485 | 0.33 | -1.5 | |
2,471,845 | + | +0.1 | |||
2,471,910 | + | -0.0 | |||
2,471,911 | - | -0.9 | |||
2,472,441 | + | PS417_11495 | 0.30 | +1.8 | |
2,472,686 | - | PS417_11495 | 0.56 | -0.0 |
Or see this region's nucleotide sequence