Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00005 and PS417_00010 are separated by 38 nucleotides PS417_00010 and PS417_00015 are separated by 20 nucleotides
PS417_00005: PS417_00005 - chromosomal replication initiation protein, at 225 to 1,742
_00005
PS417_00010: PS417_00010 - DNA polymerase III subunit beta, at 1,781 to 2,884
_00010
PS417_00015: PS417_00015 - recombinase RecF, at 2,905 to 4,008
_00015
Position (kb)
1
2
3 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1.759 kb on + strand at 2.902 kb on + strand at 2.902 kb on + strand at 2.902 kb on + strand at 2.903 kb on - strand at 2.903 kb on - strand at 3.147 kb on + strand, within PS417_00015 at 3.148 kb on - strand, within PS417_00015 at 3.148 kb on - strand, within PS417_00015 at 3.473 kb on + strand, within PS417_00015 at 3.473 kb on + strand, within PS417_00015 at 3.493 kb on + strand, within PS417_00015 at 3.493 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.684 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.805 kb on + strand, within PS417_00015 at 3.878 kb on + strand, within PS417_00015 at 3.878 kb on + strand, within PS417_00015
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 1,759 + +1.4 2,902 + -3.0 2,902 + -3.5 2,902 + -4.1 2,903 - -1.6 2,903 - -6.4 3,147 + PS417_00015 0.22 -4.8 3,148 - PS417_00015 0.22 -1.9 3,148 - PS417_00015 0.22 -0.0 3,473 + PS417_00015 0.51 -5.2 3,473 + PS417_00015 0.51 -2.4 3,493 + PS417_00015 0.53 -1.0 3,493 + PS417_00015 0.53 -4.4 3,495 + PS417_00015 0.53 -2.1 3,495 + PS417_00015 0.53 -4.1 3,495 + PS417_00015 0.53 -3.1 3,684 + PS417_00015 0.71 -1.8 3,801 + PS417_00015 0.81 -5.0 3,801 + PS417_00015 0.81 -1.3 3,801 + PS417_00015 0.81 -3.2 3,801 + PS417_00015 0.81 -2.0 3,805 + PS417_00015 0.82 -0.8 3,878 + PS417_00015 0.88 -3.3 3,878 + PS417_00015 0.88 -1.8
Or see this region's nucleotide sequence