Strain Fitness in Pseudomonas simiae WCS417 around PS417_06765

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06755 and PS417_06765 are separated by 199 nucleotidesPS417_06765 and PS417_06770 overlap by 4 nucleotides PS417_06755: PS417_06755 - porin, at 1,495,430 to 1,496,680 _06755 PS417_06765: PS417_06765 - multidrug transporter, at 1,496,880 to 1,498,337 _06765 PS417_06770: PS417_06770 - multidrug transporter, at 1,498,334 to 1,501,495 _06770 Position (kb) 1496 1497 1498 1499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1495.992 kb on + strand, within PS417_06755at 1495.992 kb on + strand, within PS417_06755at 1495.992 kb on + strand, within PS417_06755at 1495.993 kb on - strand, within PS417_06755at 1496.418 kb on + strand, within PS417_06755at 1496.447 kb on + strand, within PS417_06755at 1496.447 kb on + strand, within PS417_06755at 1496.538 kb on + strand, within PS417_06755at 1496.539 kb on - strand, within PS417_06755at 1496.708 kb on + strandat 1496.794 kb on + strandat 1496.795 kb on - strandat 1497.107 kb on - strand, within PS417_06765at 1497.158 kb on - strand, within PS417_06765at 1498.769 kb on + strand, within PS417_06770at 1498.770 kb on - strand, within PS417_06770at 1498.832 kb on + strand, within PS417_06770at 1498.919 kb on - strand, within PS417_06770at 1499.167 kb on - strand, within PS417_06770at 1499.167 kb on - strand, within PS417_06770at 1499.208 kb on + strand, within PS417_06770at 1499.209 kb on - strand, within PS417_06770

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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1,495,992 + PS417_06755 0.45 +0.5
1,495,992 + PS417_06755 0.45 -0.5
1,495,992 + PS417_06755 0.45 +2.7
1,495,993 - PS417_06755 0.45 -0.3
1,496,418 + PS417_06755 0.79 -1.2
1,496,447 + PS417_06755 0.81 -0.2
1,496,447 + PS417_06755 0.81 -0.2
1,496,538 + PS417_06755 0.89 +0.9
1,496,539 - PS417_06755 0.89 +0.3
1,496,708 + -0.4
1,496,794 + -2.0
1,496,795 - -0.3
1,497,107 - PS417_06765 0.16 +3.4
1,497,158 - PS417_06765 0.19 +2.6
1,498,769 + PS417_06770 0.14 +1.6
1,498,770 - PS417_06770 0.14 +1.6
1,498,832 + PS417_06770 0.16 +0.8
1,498,919 - PS417_06770 0.19 +0.8
1,499,167 - PS417_06770 0.26 -0.2
1,499,167 - PS417_06770 0.26 +0.4
1,499,208 + PS417_06770 0.28 +2.3
1,499,209 - PS417_06770 0.28 +0.2

Or see this region's nucleotide sequence