Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06415 and PS417_06420 are separated by 240 nucleotides PS417_06420 and PS417_06425 overlap by 4 nucleotides
PS417_06415: PS417_06415 - ABC transporter substrate-binding protein, at 1,421,504 to 1,422,283
_06415
PS417_06420: PS417_06420 - ATP-dependent DNA ligase, at 1,422,524 to 1,424,158
_06420
PS417_06425: PS417_06425 - exonuclease, at 1,424,155 to 1,425,159
_06425
Position (kb)
1422
1423
1424
1425 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1421.587 kb on + strand, within PS417_06415 at 1421.781 kb on + strand, within PS417_06415 at 1421.781 kb on + strand, within PS417_06415 at 1421.781 kb on + strand, within PS417_06415 at 1421.781 kb on + strand, within PS417_06415 at 1421.782 kb on - strand, within PS417_06415 at 1421.782 kb on - strand, within PS417_06415 at 1421.802 kb on + strand, within PS417_06415 at 1421.848 kb on - strand, within PS417_06415 at 1422.138 kb on - strand, within PS417_06415 at 1422.210 kb on + strand at 1422.211 kb on - strand at 1422.285 kb on - strand at 1422.285 kb on - strand at 1422.288 kb on + strand at 1422.289 kb on - strand at 1422.289 kb on - strand at 1422.335 kb on + strand at 1422.380 kb on + strand at 1422.380 kb on + strand at 1422.381 kb on - strand at 1422.428 kb on + strand at 1422.429 kb on - strand at 1422.429 kb on - strand at 1422.429 kb on - strand at 1422.508 kb on - strand at 1422.774 kb on + strand, within PS417_06420 at 1422.840 kb on + strand, within PS417_06420 at 1422.840 kb on + strand, within PS417_06420 at 1422.841 kb on - strand, within PS417_06420 at 1422.885 kb on + strand, within PS417_06420 at 1423.083 kb on - strand, within PS417_06420 at 1423.182 kb on + strand, within PS417_06420 at 1423.183 kb on - strand, within PS417_06420 at 1423.530 kb on + strand, within PS417_06420 at 1423.591 kb on - strand, within PS417_06420 at 1423.617 kb on - strand, within PS417_06420 at 1423.617 kb on - strand, within PS417_06420 at 1423.654 kb on + strand, within PS417_06420 at 1423.875 kb on + strand, within PS417_06420 at 1423.875 kb on + strand, within PS417_06420 at 1423.879 kb on + strand, within PS417_06420 at 1423.880 kb on - strand, within PS417_06420 at 1423.933 kb on - strand at 1424.038 kb on - strand at 1424.038 kb on - strand at 1424.079 kb on + strand at 1424.127 kb on - strand at 1424.137 kb on - strand at 1424.186 kb on + strand at 1424.186 kb on + strand at 1424.411 kb on + strand, within PS417_06425 at 1424.514 kb on - strand, within PS417_06425 at 1424.515 kb on + strand, within PS417_06425 at 1424.515 kb on + strand, within PS417_06425 at 1424.516 kb on - strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.531 kb on + strand, within PS417_06425 at 1424.532 kb on - strand, within PS417_06425 at 1424.532 kb on - strand, within PS417_06425 at 1424.532 kb on - strand, within PS417_06425 at 1424.532 kb on - strand, within PS417_06425 at 1424.532 kb on - strand, within PS417_06425 at 1424.549 kb on + strand, within PS417_06425 at 1424.738 kb on + strand, within PS417_06425 at 1424.738 kb on + strand, within PS417_06425 at 1424.739 kb on - strand, within PS417_06425 at 1424.739 kb on - strand, within PS417_06425 at 1424.769 kb on + strand, within PS417_06425 at 1424.770 kb on - strand, within PS417_06425 at 1424.829 kb on - strand, within PS417_06425 at 1424.890 kb on + strand, within PS417_06425 at 1425.024 kb on - strand, within PS417_06425 at 1425.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 1,421,587 + PS417_06415 0.11 -1.2 1,421,781 + PS417_06415 0.36 -0.8 1,421,781 + PS417_06415 0.36 +0.6 1,421,781 + PS417_06415 0.36 -0.2 1,421,781 + PS417_06415 0.36 +1.4 1,421,782 - PS417_06415 0.36 +1.1 1,421,782 - PS417_06415 0.36 +0.3 1,421,802 + PS417_06415 0.38 -0.7 1,421,848 - PS417_06415 0.44 -1.2 1,422,138 - PS417_06415 0.81 +1.2 1,422,210 + +0.6 1,422,211 - +1.0 1,422,285 - +0.4 1,422,285 - -0.2 1,422,288 + -0.1 1,422,289 - +0.0 1,422,289 - -0.8 1,422,335 + -1.6 1,422,380 + -2.0 1,422,380 + -1.0 1,422,381 - +0.9 1,422,428 + +0.9 1,422,429 - +0.3 1,422,429 - -0.8 1,422,429 - +0.1 1,422,508 - +0.1 1,422,774 + PS417_06420 0.15 -0.4 1,422,840 + PS417_06420 0.19 -0.4 1,422,840 + PS417_06420 0.19 +0.4 1,422,841 - PS417_06420 0.19 +0.6 1,422,885 + PS417_06420 0.22 -0.0 1,423,083 - PS417_06420 0.34 -1.0 1,423,182 + PS417_06420 0.40 +0.0 1,423,183 - PS417_06420 0.40 -0.3 1,423,530 + PS417_06420 0.62 -1.3 1,423,591 - PS417_06420 0.65 -1.4 1,423,617 - PS417_06420 0.67 +0.4 1,423,617 - PS417_06420 0.67 +0.2 1,423,654 + PS417_06420 0.69 -0.4 1,423,875 + PS417_06420 0.83 -0.1 1,423,875 + PS417_06420 0.83 +0.4 1,423,879 + PS417_06420 0.83 -0.2 1,423,880 - PS417_06420 0.83 +0.5 1,423,933 - +1.4 1,424,038 - -1.2 1,424,038 - -0.3 1,424,079 + -0.4 1,424,127 - -0.1 1,424,137 - +0.1 1,424,186 + -0.5 1,424,186 + +0.4 1,424,411 + PS417_06425 0.25 -0.3 1,424,514 - PS417_06425 0.36 -0.6 1,424,515 + PS417_06425 0.36 -0.1 1,424,515 + PS417_06425 0.36 +0.2 1,424,516 - PS417_06425 0.36 +0.4 1,424,531 + PS417_06425 0.37 -0.4 1,424,531 + PS417_06425 0.37 -0.5 1,424,531 + +1.4 1,424,531 + PS417_06425 0.37 +0.9 1,424,531 + PS417_06425 0.37 +1.3 1,424,531 + PS417_06425 0.37 +1.5 1,424,531 + PS417_06425 0.37 -0.2 1,424,531 + PS417_06425 0.37 +0.9 1,424,531 + PS417_06425 0.37 -0.1 1,424,532 - PS417_06425 0.38 +0.4 1,424,532 - PS417_06425 0.38 +0.2 1,424,532 - PS417_06425 0.38 -0.4 1,424,532 - PS417_06425 0.38 -1.0 1,424,532 - PS417_06425 0.38 +0.0 1,424,549 + PS417_06425 0.39 +1.8 1,424,738 + PS417_06425 0.58 +0.7 1,424,738 + PS417_06425 0.58 -2.4 1,424,739 - PS417_06425 0.58 -0.6 1,424,739 - PS417_06425 0.58 -0.2 1,424,769 + PS417_06425 0.61 +0.1 1,424,770 - PS417_06425 0.61 -1.4 1,424,829 - PS417_06425 0.67 -0.4 1,424,890 + PS417_06425 0.73 -1.0 1,425,024 - PS417_06425 0.86 -0.5 1,425,104 + -1.1
Or see this region's nucleotide sequence