Strain Fitness in Pseudomonas simiae WCS417 around PS417_06245

Experiment: Cisplatin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06240 and PS417_06245 are separated by 53 nucleotidesPS417_06245 and PS417_06250 are separated by 74 nucleotides PS417_06240: PS417_06240 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,383,657 to 1,384,847 _06240 PS417_06245: PS417_06245 - zinc metallopeptidase RseP, at 1,384,901 to 1,386,253 _06245 PS417_06250: PS417_06250 - membrane protein, at 1,386,328 to 1,388,715 _06250 Position (kb) 1384 1385 1386 1387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1384.913 kb on + strandat 1384.913 kb on + strandat 1384.913 kb on + strandat 1384.914 kb on - strandat 1384.955 kb on - strandat 1385.151 kb on + strand, within PS417_06245at 1385.356 kb on + strand, within PS417_06245at 1385.544 kb on + strand, within PS417_06245at 1385.545 kb on - strand, within PS417_06245at 1386.219 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
remove
1,384,913 + -2.4
1,384,913 + -3.8
1,384,913 + -2.0
1,384,914 - -2.9
1,384,955 - -3.5
1,385,151 + PS417_06245 0.18 -1.7
1,385,356 + PS417_06245 0.34 -2.4
1,385,544 + PS417_06245 0.48 -3.6
1,385,545 - PS417_06245 0.48 -0.9
1,386,219 + -1.2

Or see this region's nucleotide sequence