Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0546 and B158DRAFT_0547 are separated by 69 nucleotides B158DRAFT_0547 and B158DRAFT_0548 are separated by 111 nucleotides B158DRAFT_0548 and B158DRAFT_0549 are separated by 9 nucleotides
B158DRAFT_0546: B158DRAFT_0546 - Tetrapyrrole (Corrin/Porphyrin) Methylases., at 553,596 to 554,396
_0546
B158DRAFT_0547: B158DRAFT_0547 - Aromatic-ring-opening dioxygenase LigAB, LigA subunit., at 554,466 to 554,687
_0547
B158DRAFT_0548: B158DRAFT_0548 - hypothetical protein, at 554,799 to 555,863
_0548
B158DRAFT_0549: B158DRAFT_0549 - hypothetical protein, at 555,873 to 556,979
_0549
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 553.850 kb on + strand, within B158DRAFT_0546 at 553.858 kb on - strand, within B158DRAFT_0546 at 553.952 kb on + strand, within B158DRAFT_0546 at 554.022 kb on + strand, within B158DRAFT_0546 at 554.130 kb on - strand, within B158DRAFT_0546 at 554.152 kb on + strand, within B158DRAFT_0546 at 554.243 kb on + strand, within B158DRAFT_0546 at 554.251 kb on - strand, within B158DRAFT_0546 at 554.251 kb on - strand, within B158DRAFT_0546 at 554.321 kb on + strand at 554.396 kb on - strand at 554.526 kb on - strand, within B158DRAFT_0547 at 554.618 kb on + strand, within B158DRAFT_0547 at 554.733 kb on + strand at 554.888 kb on + strand at 554.920 kb on + strand, within B158DRAFT_0548 at 554.920 kb on + strand, within B158DRAFT_0548 at 554.920 kb on + strand, within B158DRAFT_0548 at 554.938 kb on - strand, within B158DRAFT_0548 at 554.943 kb on - strand, within B158DRAFT_0548 at 555.005 kb on + strand, within B158DRAFT_0548 at 555.013 kb on - strand, within B158DRAFT_0548 at 555.147 kb on + strand, within B158DRAFT_0548 at 555.206 kb on - strand, within B158DRAFT_0548 at 555.287 kb on - strand, within B158DRAFT_0548 at 555.983 kb on + strand at 556.121 kb on + strand, within B158DRAFT_0549 at 556.128 kb on + strand, within B158DRAFT_0549 at 556.129 kb on - strand, within B158DRAFT_0549 at 556.136 kb on - strand, within B158DRAFT_0549 at 556.210 kb on - strand, within B158DRAFT_0549 at 556.321 kb on + strand, within B158DRAFT_0549 at 556.330 kb on - strand, within B158DRAFT_0549 at 556.330 kb on - strand, within B158DRAFT_0549 at 556.458 kb on - strand, within B158DRAFT_0549 at 556.507 kb on + strand, within B158DRAFT_0549 at 556.614 kb on + strand, within B158DRAFT_0549 at 556.666 kb on - strand, within B158DRAFT_0549
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 553,850 + B158DRAFT_0546 0.32 +0.1 553,858 - B158DRAFT_0546 0.33 -0.1 553,952 + B158DRAFT_0546 0.44 -0.2 554,022 + B158DRAFT_0546 0.53 -3.4 554,130 - B158DRAFT_0546 0.67 -0.4 554,152 + B158DRAFT_0546 0.69 +0.4 554,243 + B158DRAFT_0546 0.81 -0.2 554,251 - B158DRAFT_0546 0.82 +0.2 554,251 - B158DRAFT_0546 0.82 -1.2 554,321 + +0.1 554,396 - -0.1 554,526 - B158DRAFT_0547 0.27 +0.8 554,618 + B158DRAFT_0547 0.68 -0.4 554,733 + -0.1 554,888 + +0.6 554,920 + B158DRAFT_0548 0.11 -0.4 554,920 + B158DRAFT_0548 0.11 +0.1 554,920 + B158DRAFT_0548 0.11 +0.4 554,938 - B158DRAFT_0548 0.13 +0.3 554,943 - B158DRAFT_0548 0.14 -0.5 555,005 + B158DRAFT_0548 0.19 +0.1 555,013 - B158DRAFT_0548 0.20 +0.0 555,147 + B158DRAFT_0548 0.33 -0.0 555,206 - B158DRAFT_0548 0.38 +0.0 555,287 - B158DRAFT_0548 0.46 +0.3 555,983 + -0.7 556,121 + B158DRAFT_0549 0.22 -0.6 556,128 + B158DRAFT_0549 0.23 +0.3 556,129 - B158DRAFT_0549 0.23 -0.1 556,136 - B158DRAFT_0549 0.24 -0.1 556,210 - B158DRAFT_0549 0.30 -0.3 556,321 + B158DRAFT_0549 0.40 -0.6 556,330 - B158DRAFT_0549 0.41 +0.2 556,330 - B158DRAFT_0549 0.41 -0.3 556,458 - B158DRAFT_0549 0.53 +0.1 556,507 + B158DRAFT_0549 0.57 +0.3 556,614 + B158DRAFT_0549 0.67 +0.5 556,666 - B158DRAFT_0549 0.72 +0.7
Or see this region's nucleotide sequence