Strain Fitness in Agrobacterium fabrum C58 around Atu3873

Experiment: R2A with Novobiocin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3871 and Atu3872 are separated by 29 nucleotidesAtu3872 and Atu3873 are separated by 195 nucleotidesAtu3873 and Atu3874 are separated by 255 nucleotides Atu3871: Atu3871 - L-lactate dehydrogenase, at 964,886 to 966,031 Atu3871 Atu3872: Atu3872 - hypothetical protein, at 966,061 to 966,405 Atu3872 Atu3873: Atu3873 - hypothetical protein, at 966,601 to 967,581 Atu3873 Atu3874: Atu3874 - L-xylulose kinase, at 967,837 to 969,315 Atu3874 Position (kb) 966 967 968Strain fitness (log2 ratio) -1 0 1 2at 965.601 kb on + strand, within Atu3871at 965.626 kb on + strand, within Atu3871at 965.793 kb on + strand, within Atu3871at 965.824 kb on + strand, within Atu3871at 965.832 kb on - strand, within Atu3871at 965.925 kb on - strandat 965.975 kb on + strandat 965.975 kb on - strandat 965.983 kb on - strandat 965.983 kb on - strandat 966.159 kb on - strand, within Atu3872at 966.337 kb on + strand, within Atu3872at 966.337 kb on + strand, within Atu3872at 966.337 kb on + strand, within Atu3872at 966.345 kb on - strand, within Atu3872at 966.345 kb on - strand, within Atu3872at 966.345 kb on - strand, within Atu3872at 966.453 kb on + strandat 966.461 kb on - strandat 966.466 kb on + strandat 966.466 kb on + strandat 966.476 kb on + strandat 966.520 kb on + strandat 966.528 kb on - strandat 966.533 kb on - strandat 966.550 kb on - strandat 966.749 kb on + strand, within Atu3873at 966.749 kb on + strand, within Atu3873at 966.784 kb on + strand, within Atu3873at 966.789 kb on - strand, within Atu3873at 966.939 kb on - strand, within Atu3873at 966.965 kb on + strand, within Atu3873at 966.992 kb on + strand, within Atu3873at 967.107 kb on + strand, within Atu3873at 967.115 kb on - strand, within Atu3873at 967.204 kb on + strand, within Atu3873at 967.392 kb on + strand, within Atu3873at 967.480 kb on - strand, within Atu3873at 967.526 kb on + strandat 967.591 kb on + strandat 967.641 kb on + strandat 967.748 kb on + strandat 967.811 kb on + strandat 968.002 kb on - strand, within Atu3874at 968.013 kb on + strand, within Atu3874at 968.018 kb on + strand, within Atu3874at 968.095 kb on + strand, within Atu3874at 968.131 kb on + strand, within Atu3874at 968.162 kb on + strand, within Atu3874at 968.207 kb on + strand, within Atu3874at 968.207 kb on + strand, within Atu3874at 968.215 kb on - strand, within Atu3874at 968.233 kb on + strand, within Atu3874at 968.240 kb on - strand, within Atu3874at 968.353 kb on - strand, within Atu3874at 968.363 kb on - strand, within Atu3874at 968.478 kb on - strand, within Atu3874at 968.493 kb on + strand, within Atu3874at 968.493 kb on + strand, within Atu3874at 968.506 kb on - strand, within Atu3874at 968.572 kb on + strand, within Atu3874at 968.580 kb on + strand, within Atu3874

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Novobiocin 0.002 mM
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965,601 + Atu3871 0.62 -0.0
965,626 + Atu3871 0.65 +0.6
965,793 + Atu3871 0.79 +0.8
965,824 + Atu3871 0.82 +0.3
965,832 - Atu3871 0.83 +1.2
965,925 - +1.4
965,975 + +0.7
965,975 - +0.8
965,983 - -0.5
965,983 - +0.3
966,159 - Atu3872 0.28 -0.1
966,337 + Atu3872 0.80 -0.6
966,337 + Atu3872 0.80 +0.0
966,337 + Atu3872 0.80 +0.5
966,345 - Atu3872 0.82 -0.4
966,345 - Atu3872 0.82 +0.4
966,345 - Atu3872 0.82 +0.0
966,453 + -1.1
966,461 - -0.8
966,466 + -0.7
966,466 + +0.1
966,476 + +0.4
966,520 + -0.4
966,528 - +0.5
966,533 - -0.3
966,550 - +0.2
966,749 + Atu3873 0.15 -0.7
966,749 + Atu3873 0.15 +0.7
966,784 + Atu3873 0.19 +0.9
966,789 - Atu3873 0.19 +0.6
966,939 - Atu3873 0.34 +1.5
966,965 + Atu3873 0.37 +0.5
966,992 + Atu3873 0.40 +0.1
967,107 + Atu3873 0.52 +1.0
967,115 - Atu3873 0.52 -0.1
967,204 + Atu3873 0.61 +1.8
967,392 + Atu3873 0.81 +0.6
967,480 - Atu3873 0.90 +0.5
967,526 + -0.2
967,591 + +0.4
967,641 + +1.0
967,748 + -0.6
967,811 + -0.6
968,002 - Atu3874 0.11 -0.7
968,013 + Atu3874 0.12 -0.8
968,018 + Atu3874 0.12 +0.7
968,095 + Atu3874 0.17 -1.6
968,131 + Atu3874 0.20 -0.5
968,162 + Atu3874 0.22 +1.4
968,207 + Atu3874 0.25 +0.7
968,207 + Atu3874 0.25 +0.3
968,215 - Atu3874 0.26 +2.1
968,233 + Atu3874 0.27 -0.2
968,240 - Atu3874 0.27 -0.3
968,353 - Atu3874 0.35 +0.6
968,363 - Atu3874 0.36 +0.6
968,478 - Atu3874 0.43 -0.9
968,493 + Atu3874 0.44 -0.0
968,493 + Atu3874 0.44 +0.7
968,506 - Atu3874 0.45 +0.2
968,572 + Atu3874 0.50 -0.5
968,580 + Atu3874 0.50 +1.0

Or see this region's nucleotide sequence