Strain Fitness in Agrobacterium fabrum C58 around Atu1448

Experiment: R2A with Novobiocin 0.002 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1447 and Atu1448 overlap by 11 nucleotidesAtu1448 and Atu1449 are separated by 48 nucleotides Atu1447: Atu1447 - two component sensor kinase, at 1,440,899 to 1,443,160 Atu1447 Atu1448: Atu1448 - two component response regulator, at 1,443,150 to 1,444,514 Atu1448 Atu1449: Atu1449 - potassium uptake protein, at 1,444,563 to 1,445,939 Atu1449 Position (kb) 1443 1444 1445Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1442.554 kb on + strand, within Atu1447at 1442.579 kb on + strand, within Atu1447at 1442.974 kb on + strandat 1442.988 kb on + strandat 1443.026 kb on + strandat 1444.535 kb on - strandat 1444.569 kb on - strandat 1444.587 kb on + strandat 1444.587 kb on + strandat 1444.587 kb on + strandat 1444.603 kb on - strandat 1444.628 kb on + strandat 1444.876 kb on - strand, within Atu1449at 1444.893 kb on + strand, within Atu1449at 1445.044 kb on + strand, within Atu1449at 1445.151 kb on + strand, within Atu1449at 1445.399 kb on - strand, within Atu1449

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Novobiocin 0.002 mM
remove
1,442,554 + Atu1447 0.73 -4.2
1,442,579 + Atu1447 0.74 -0.5
1,442,974 + -0.4
1,442,988 + -1.8
1,443,026 + -1.3
1,444,535 - -0.1
1,444,569 - -0.2
1,444,587 + -0.3
1,444,587 + +0.4
1,444,587 + -0.2
1,444,603 - -1.7
1,444,628 + +0.3
1,444,876 - Atu1449 0.23 +0.1
1,444,893 + Atu1449 0.24 +1.4
1,445,044 + Atu1449 0.35 -0.6
1,445,151 + Atu1449 0.43 +0.0
1,445,399 - Atu1449 0.61 +0.1

Or see this region's nucleotide sequence