Strain Fitness in Escherichia coli BW25113 around b2751
Experiment: 2-undecanol 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-undecanol 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,871,097 | + | ygbE | b2749 | 0.19 | +0.6 |
2,871,140 | - | ygbE | b2749 | 0.32 | +0.6 |
2,871,145 | - | ygbE | b2749 | 0.34 | +0.7 |
2,871,145 | - | ygbE | b2749 | 0.34 | +0.6 |
2,871,149 | + | ygbE | b2749 | 0.35 | -0.1 |
2,871,197 | - | ygbE | b2749 | 0.50 | +0.3 |
2,871,197 | - | ygbE | b2749 | 0.50 | +1.1 |
2,871,197 | - | ygbE | b2749 | 0.50 | +0.4 |
2,871,207 | - | ygbE | b2749 | 0.53 | +0.8 |
2,871,207 | - | ygbE | b2749 | 0.53 | +0.7 |
2,871,248 | + | ygbE | b2749 | 0.65 | +0.8 |
2,871,285 | - | ygbE | b2749 | 0.77 | +0.1 |
2,871,290 | + | ygbE | b2749 | 0.78 | +1.0 |
2,871,311 | + | ygbE | b2749 | 0.85 | +0.6 |
2,871,391 | + | +0.4 | |||
2,871,421 | - | +0.5 | |||
2,871,534 | - | cysC | b2750 | 0.21 | +0.2 |
2,871,692 | - | cysC | b2750 | 0.47 | -0.9 |
2,871,703 | + | cysC | b2750 | 0.49 | +0.2 |
2,871,807 | - | cysC | b2750 | 0.66 | -0.1 |
2,871,807 | - | cysC | b2750 | 0.66 | +0.2 |
2,871,866 | + | cysC | b2750 | 0.75 | -0.4 |
2,871,866 | + | cysC | b2750 | 0.75 | -0.2 |
2,871,907 | - | cysC | b2750 | 0.82 | +0.8 |
2,871,911 | - | cysC | b2750 | 0.83 | -0.1 |
2,871,919 | + | cysC | b2750 | 0.84 | +0.1 |
2,871,952 | + | cysC | b2750 | 0.90 | +0.9 |
2,871,953 | - | cysC | b2750 | 0.90 | +0.1 |
2,871,966 | - | +0.2 | |||
2,871,968 | - | +0.9 | |||
2,872,057 | - | +0.4 | |||
2,872,264 | + | cysN | b2751 | 0.18 | +0.1 |
2,872,298 | + | cysN | b2751 | 0.20 | -1.2 |
2,872,478 | - | cysN | b2751 | 0.32 | +0.1 |
2,872,760 | + | cysN | b2751 | 0.52 | +0.4 |
2,872,768 | - | cysN | b2751 | 0.53 | -0.1 |
2,872,768 | - | cysN | b2751 | 0.53 | -0.0 |
2,872,963 | + | cysN | b2751 | 0.66 | +1.0 |
2,872,965 | + | cysN | b2751 | 0.67 | -0.2 |
2,872,971 | - | cysN | b2751 | 0.67 | -1.9 |
2,873,014 | + | cysN | b2751 | 0.70 | +0.4 |
2,873,085 | - | cysN | b2751 | 0.75 | -0.6 |
2,873,093 | + | cysN | b2751 | 0.76 | +0.1 |
2,873,179 | - | cysN | b2751 | 0.82 | +0.5 |
2,873,260 | + | cysN | b2751 | 0.87 | +0.0 |
2,873,472 | + | +0.1 | |||
2,873,480 | - | +0.5 | |||
2,873,480 | - | -0.8 | |||
2,873,480 | - | -0.8 | |||
2,873,614 | + | cysD | b2752 | 0.19 | -0.1 |
2,873,773 | + | cysD | b2752 | 0.36 | +1.4 |
2,873,773 | + | cysD | b2752 | 0.36 | -0.3 |
2,873,837 | + | cysD | b2752 | 0.43 | +0.1 |
2,873,951 | - | cysD | b2752 | 0.56 | +0.5 |
2,873,951 | - | cysD | b2752 | 0.56 | -0.1 |
2,873,953 | + | cysD | b2752 | 0.56 | +0.4 |
2,874,048 | + | cysD | b2752 | 0.67 | +0.4 |
2,874,225 | - | cysD | b2752 | 0.86 | +0.1 |
2,874,306 | + | +0.9 | |||
2,874,325 | - | +0.2 | |||
2,874,330 | - | +0.1 | |||
2,874,343 | - | -0.4 | |||
2,874,362 | + | -0.7 | |||
2,874,362 | + | -0.0 | |||
2,874,367 | - | -0.1 | |||
2,874,394 | - | +0.3 | |||
2,874,394 | - | +0.3 | |||
2,874,399 | + | -0.1 | |||
2,874,399 | + | +0.0 | |||
2,874,399 | + | +2.1 | |||
2,874,399 | + | -0.9 | |||
2,874,407 | - | -0.2 | |||
2,874,407 | - | -0.9 | |||
2,874,407 | - | +0.0 | |||
2,874,435 | + | +0.7 |
Or see this region's nucleotide sequence