Strain Fitness in Pseudomonas simiae WCS417 around PS417_28515

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28505 and PS417_28510 are separated by 9 nucleotidesPS417_28510 and PS417_28515 are separated by 18 nucleotidesPS417_28515 and PS417_28520 overlap by 4 nucleotides PS417_28505: PS417_28505 - chromosome partitioning protein ParB, at 6,155,933 to 6,156,805 _28505 PS417_28510: PS417_28510 - chromosome partitioning protein, at 6,156,815 to 6,157,612 _28510 PS417_28515: PS417_28515 - 16S rRNA methyltransferase, at 6,157,631 to 6,158,275 _28515 PS417_28520: PS417_28520 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 6,158,272 to 6,160,164 _28520 Position (kb) 6157 6158 6159Strain fitness (log2 ratio) -1 0 1 2at 6156.817 kb on - strandat 6156.817 kb on - strandat 6156.987 kb on + strand, within PS417_28510at 6156.987 kb on + strand, within PS417_28510at 6157.155 kb on + strand, within PS417_28510at 6157.159 kb on - strand, within PS417_28510at 6157.159 kb on - strand, within PS417_28510at 6157.251 kb on + strand, within PS417_28510at 6157.387 kb on - strand, within PS417_28510at 6157.387 kb on - strand, within PS417_28510at 6157.431 kb on + strand, within PS417_28510at 6157.601 kb on + strandat 6157.650 kb on - strandat 6157.730 kb on + strand, within PS417_28515at 6158.139 kb on + strand, within PS417_28515at 6158.139 kb on + strand, within PS417_28515at 6158.140 kb on - strand, within PS417_28515

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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6,156,817 - +0.0
6,156,817 - -0.4
6,156,987 + PS417_28510 0.22 -0.3
6,156,987 + PS417_28510 0.22 +0.2
6,157,155 + PS417_28510 0.43 +0.5
6,157,159 - PS417_28510 0.43 +0.6
6,157,159 - PS417_28510 0.43 -0.6
6,157,251 + PS417_28510 0.55 -1.3
6,157,387 - PS417_28510 0.72 -0.7
6,157,387 - PS417_28510 0.72 -1.1
6,157,431 + PS417_28510 0.77 +2.3
6,157,601 + +0.9
6,157,650 - -1.3
6,157,730 + PS417_28515 0.15 -0.3
6,158,139 + PS417_28515 0.79 -1.2
6,158,139 + PS417_28515 0.79 +0.2
6,158,140 - PS417_28515 0.79 -1.7

Or see this region's nucleotide sequence