Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27790 and PS417_27795 are separated by 201 nucleotides PS417_27795 and PS417_27800 are separated by 82 nucleotides PS417_27800 and PS417_27805 are separated by 58 nucleotides PS417_27805 and PS417_27810 are separated by 22 nucleotides
PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028
_27790
PS417_27795: PS417_27795 - orotate phosphoribosyltransferase, at 5,994,230 to 5,994,874
_27795
PS417_27800: PS417_27800 - exodeoxyribonuclease III, at 5,994,957 to 5,995,736
_27800
PS417_27805: PS417_27805 - orotate phosphoribosyltransferase, at 5,995,795 to 5,996,166
_27805
PS417_27810: PS417_27810 - ribonuclease PH, at 5,996,189 to 5,996,911
_27810
Position (kb) 5994
5995
5996 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5994.027 kb on - strand at 5994.162 kb on - strand at 5994.515 kb on + strand, within PS417_27795 at 5994.891 kb on - strand at 5994.891 kb on - strand at 5994.910 kb on - strand at 5994.910 kb on - strand at 5994.925 kb on - strand at 5994.930 kb on - strand at 5994.956 kb on + strand at 5995.384 kb on - strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.516 kb on - strand, within PS417_27800 at 5995.557 kb on + strand, within PS417_27800 at 5995.558 kb on - strand, within PS417_27800 at 5995.558 kb on - strand, within PS417_27800 at 5995.796 kb on + strand at 5996.376 kb on + strand, within PS417_27810 at 5996.376 kb on + strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.407 kb on - strand at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 5,994,027 - +0.5 5,994,162 - -0.8 5,994,515 + PS417_27795 0.44 -0.8 5,994,891 - -2.4 5,994,891 - -1.7 5,994,910 - -0.8 5,994,910 - -3.1 5,994,925 - -2.4 5,994,930 - -2.5 5,994,956 + +0.2 5,995,384 - PS417_27800 0.55 -4.6 5,995,389 + PS417_27800 0.55 -1.3 5,995,389 + PS417_27800 0.55 -5.9 5,995,389 + PS417_27800 0.55 -4.1 5,995,389 + PS417_27800 0.55 -1.8 5,995,404 + PS417_27800 0.57 -3.3 5,995,404 + PS417_27800 0.57 -4.3 5,995,404 + PS417_27800 0.57 -2.4 5,995,516 - PS417_27800 0.72 -4.5 5,995,557 + PS417_27800 0.77 -2.9 5,995,558 - PS417_27800 0.77 -4.1 5,995,558 - PS417_27800 0.77 -1.1 5,995,796 + -0.3 5,996,376 + PS417_27810 0.26 -0.8 5,996,376 + PS417_27810 0.26 -0.3 5,996,377 - PS417_27810 0.26 +0.3 5,996,377 - PS417_27810 0.26 -0.2 5,996,377 - PS417_27810 0.26 -0.3 5,996,406 + PS417_27810 0.30 -1.1 5,996,406 + PS417_27810 0.30 -1.0 5,996,406 + PS417_27810 0.30 -0.5 5,996,406 + PS417_27810 0.30 +0.5 5,996,407 - +1.5 5,996,407 - PS417_27810 0.30 -0.4 5,996,407 - PS417_27810 0.30 -0.5 5,996,407 - PS417_27810 0.30 -0.6 5,996,407 - PS417_27810 0.30 -0.9 5,996,407 - PS417_27810 0.30 -1.7 5,996,571 + PS417_27810 0.53 -1.4 5,996,571 + PS417_27810 0.53 +0.0 5,996,571 + PS417_27810 0.53 -1.0 5,996,571 + PS417_27810 0.53 +0.6 5,996,572 - PS417_27810 0.53 -0.5 5,996,572 - PS417_27810 0.53 -0.6 5,996,572 - PS417_27810 0.53 -1.3
Or see this region's nucleotide sequence