Strain Fitness in Pseudomonas simiae WCS417 around PS417_27670
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,967,642 | + | PS417_27665 | 0.83 | +0.2 | |
5,967,643 | - | PS417_27665 | 0.83 | -0.4 | |
5,967,643 | - | PS417_27665 | 0.83 | -0.4 | |
5,967,643 | - | PS417_27665 | 0.83 | -0.1 | |
5,967,643 | - | PS417_27665 | 0.83 | -0.0 | |
5,967,643 | - | PS417_27665 | 0.83 | +0.3 | |
5,967,709 | - | PS417_27665 | 0.87 | -0.0 | |
5,967,935 | + | -1.0 | |||
5,967,935 | + | -0.1 | |||
5,967,936 | - | +0.1 | |||
5,967,936 | - | -0.1 | |||
5,967,943 | + | +0.5 | |||
5,967,976 | - | -0.1 | |||
5,968,047 | + | +1.9 | |||
5,968,090 | - | -0.1 | |||
5,968,102 | - | +0.0 | |||
5,969,980 | - | PS417_27670 | 0.89 | +0.9 | |
5,970,311 | + | -0.2 | |||
5,970,311 | + | +2.0 | |||
5,970,312 | - | +0.1 | |||
5,970,527 | + | PS417_27675 | 0.47 | -0.8 | |
5,970,527 | + | PS417_27675 | 0.47 | +0.5 | |
5,970,528 | - | PS417_27675 | 0.47 | -0.2 | |
5,970,544 | + | PS417_27675 | 0.50 | +0.0 | |
5,970,545 | - | PS417_27675 | 0.50 | +0.1 | |
5,970,847 | + | -0.1 | |||
5,970,848 | - | +0.8 | |||
5,970,896 | + | +0.2 | |||
5,970,897 | - | +1.8 | |||
5,970,897 | - | +0.7 | |||
5,970,897 | - | -0.1 | |||
5,971,006 | + | +0.0 | |||
5,971,006 | + | -0.2 |
Or see this region's nucleotide sequence