Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26340 and PS417_26345 are separated by 161 nucleotides PS417_26345 and PS417_26350 are separated by 180 nucleotides
PS417_26340: PS417_26340 - betaine-aldehyde dehydrogenase, at 5,693,477 to 5,694,949
_26340
PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814
_26345
PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437
_26350
Position (kb) 5695
5696
5697 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 5694.315 kb on - strand, within PS417_26340 at 5694.495 kb on - strand, within PS417_26340 at 5694.508 kb on + strand, within PS417_26340 at 5694.509 kb on - strand, within PS417_26340 at 5694.669 kb on - strand, within PS417_26340 at 5694.788 kb on - strand, within PS417_26340 at 5694.947 kb on + strand at 5694.948 kb on - strand at 5694.948 kb on - strand at 5694.948 kb on - strand at 5694.963 kb on + strand at 5694.963 kb on + strand at 5694.963 kb on + strand at 5694.963 kb on + strand at 5694.970 kb on + strand at 5694.971 kb on - strand at 5694.971 kb on - strand at 5694.971 kb on - strand at 5694.972 kb on + strand at 5694.972 kb on + strand at 5694.973 kb on - strand at 5695.034 kb on - strand at 5695.034 kb on - strand at 5695.034 kb on - strand at 5695.034 kb on - strand at 5695.037 kb on + strand at 5695.037 kb on + strand at 5695.037 kb on + strand at 5695.038 kb on - strand at 5695.038 kb on - strand at 5695.038 kb on - strand at 5695.088 kb on - strand at 5695.088 kb on - strand at 5695.129 kb on + strand at 5695.129 kb on + strand at 5695.130 kb on - strand at 5695.130 kb on - strand at 5695.244 kb on + strand at 5695.403 kb on - strand, within PS417_26345 at 5695.403 kb on - strand, within PS417_26345 at 5695.614 kb on - strand, within PS417_26345 at 5695.614 kb on - strand, within PS417_26345 at 5695.683 kb on + strand, within PS417_26345 at 5695.877 kb on + strand, within PS417_26345 at 5696.024 kb on - strand, within PS417_26345 at 5696.077 kb on + strand, within PS417_26345 at 5696.228 kb on - strand, within PS417_26345 at 5696.228 kb on - strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.356 kb on + strand, within PS417_26345 at 5696.357 kb on - strand, within PS417_26345 at 5696.357 kb on - strand, within PS417_26345 at 5696.469 kb on + strand, within PS417_26345 at 5696.749 kb on + strand at 5696.749 kb on + strand at 5696.750 kb on - strand at 5696.812 kb on + strand at 5697.074 kb on + strand at 5697.074 kb on + strand at 5697.091 kb on + strand at 5697.319 kb on + strand, within PS417_26350 at 5697.368 kb on - strand, within PS417_26350 at 5697.509 kb on + strand, within PS417_26350 at 5697.509 kb on + strand, within PS417_26350 at 5697.626 kb on + strand, within PS417_26350 at 5697.796 kb on + strand, within PS417_26350
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 5,694,315 - PS417_26340 0.57 -3.3 5,694,495 - PS417_26340 0.69 -5.9 5,694,508 + PS417_26340 0.70 -3.0 5,694,509 - PS417_26340 0.70 +1.4 5,694,669 - PS417_26340 0.81 -5.7 5,694,788 - PS417_26340 0.89 -0.6 5,694,947 + +0.1 5,694,948 - -4.5 5,694,948 - -1.4 5,694,948 - -1.2 5,694,963 + -0.9 5,694,963 + +2.8 5,694,963 + -1.2 5,694,963 + +2.5 5,694,970 + +1.9 5,694,971 - -2.0 5,694,971 - -4.4 5,694,971 - -2.9 5,694,972 + +0.8 5,694,972 + +0.4 5,694,973 - +0.7 5,695,034 - -0.9 5,695,034 - -4.5 5,695,034 - -2.7 5,695,034 - -4.5 5,695,037 + +1.5 5,695,037 + -0.4 5,695,037 + -0.0 5,695,038 - -3.1 5,695,038 - -2.9 5,695,038 - -4.3 5,695,088 - -2.2 5,695,088 - -1.4 5,695,129 + -0.9 5,695,129 + -4.6 5,695,130 - -2.8 5,695,130 - -2.3 5,695,244 + -3.8 5,695,403 - PS417_26345 0.17 -4.2 5,695,403 - PS417_26345 0.17 -0.6 5,695,614 - PS417_26345 0.30 -1.7 5,695,614 - PS417_26345 0.30 -3.3 5,695,683 + PS417_26345 0.34 -2.7 5,695,877 + PS417_26345 0.45 -3.5 5,696,024 - PS417_26345 0.54 -1.2 5,696,077 + PS417_26345 0.57 +1.8 5,696,228 - PS417_26345 0.66 -0.8 5,696,228 - PS417_26345 0.66 -4.6 5,696,356 + PS417_26345 0.73 -2.8 5,696,356 + PS417_26345 0.73 -3.7 5,696,356 + PS417_26345 0.73 -2.0 5,696,357 - PS417_26345 0.73 -1.9 5,696,357 - PS417_26345 0.73 -0.6 5,696,469 + PS417_26345 0.80 -2.6 5,696,749 + -3.8 5,696,749 + -4.4 5,696,750 - -2.3 5,696,812 + -1.4 5,697,074 + -0.2 5,697,074 + +0.1 5,697,091 + -0.1 5,697,319 + PS417_26350 0.22 -0.6 5,697,368 - PS417_26350 0.26 -0.4 5,697,509 + PS417_26350 0.36 -0.1 5,697,509 + PS417_26350 0.36 +0.1 5,697,626 + PS417_26350 0.44 -0.2 5,697,796 + PS417_26350 0.56 +1.1
Or see this region's nucleotide sequence