Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02485 and PS417_02490 are separated by 95 nucleotides PS417_02490 and PS417_02495 are separated by 12 nucleotides PS417_02495 and PS417_02500 are separated by 96 nucleotides
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
PS417_02490: PS417_02490 - RNA-binding protein Hfq, at 569,482 to 569,742
_02490
PS417_02495: PS417_02495 - GTPase HflX, at 569,755 to 571,056
_02495
PS417_02500: PS417_02500 - membrane protein, at 571,153 to 572,328
_02500
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485 at 569.466 kb on + strand at 569.733 kb on + strand at 569.743 kb on + strand at 569.744 kb on - strand at 569.744 kb on - strand at 569.744 kb on - strand at 569.898 kb on - strand, within PS417_02495 at 570.028 kb on - strand, within PS417_02495 at 570.370 kb on + strand, within PS417_02495 at 570.373 kb on - strand, within PS417_02495 at 570.516 kb on - strand, within PS417_02495 at 570.565 kb on - strand, within PS417_02495 at 570.703 kb on + strand, within PS417_02495 at 570.703 kb on + strand, within PS417_02495 at 571.019 kb on + strand at 571.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 569,016 - PS417_02485 0.62 -1.7 569,018 - PS417_02485 0.62 -1.3 569,092 + PS417_02485 0.70 -0.3 569,093 - PS417_02485 0.70 -1.9 569,124 + PS417_02485 0.73 -0.5 569,179 - PS417_02485 0.79 -2.6 569,466 + -1.3 569,733 + -2.5 569,743 + -3.2 569,744 - -1.7 569,744 - -2.6 569,744 - -0.3 569,898 - PS417_02495 0.11 -1.8 570,028 - PS417_02495 0.21 -2.5 570,370 + PS417_02495 0.47 -1.1 570,373 - PS417_02495 0.47 -2.4 570,516 - PS417_02495 0.58 -3.4 570,565 - PS417_02495 0.62 -0.8 570,703 + PS417_02495 0.73 -0.5 570,703 + PS417_02495 0.73 -2.1 571,019 + +3.0 571,065 + -0.4
Or see this region's nucleotide sequence