Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24715 and PS417_24720 are separated by 17 nucleotides PS417_24720 and PS417_24725 overlap by 11 nucleotides
PS417_24715: PS417_24715 - lytic transglycosylase, at 5,362,045 to 5,363,055
_24715
PS417_24720: PS417_24720 - rod shape-determining protein RodA, at 5,363,073 to 5,364,218
_24720
PS417_24725: PS417_24725 - penicillin-binding protein 2, at 5,364,208 to 5,366,106
_24725
Position (kb)
5363
5364
5365 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.104 kb on - strand at 5362.120 kb on - strand at 5362.122 kb on - strand at 5362.122 kb on - strand at 5362.206 kb on + strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.207 kb on - strand, within PS417_24715 at 5362.370 kb on + strand, within PS417_24715 at 5362.370 kb on + strand, within PS417_24715 at 5362.413 kb on + strand, within PS417_24715 at 5362.413 kb on + strand, within PS417_24715 at 5362.414 kb on - strand at 5362.414 kb on - strand, within PS417_24715 at 5362.414 kb on - strand, within PS417_24715 at 5362.419 kb on + strand, within PS417_24715 at 5362.420 kb on - strand, within PS417_24715 at 5362.420 kb on - strand, within PS417_24715 at 5362.800 kb on - strand, within PS417_24715 at 5362.961 kb on + strand at 5362.961 kb on + strand at 5362.962 kb on - strand at 5362.962 kb on - strand at 5363.047 kb on + strand at 5363.048 kb on - strand at 5363.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 5,362,104 - -0.1 5,362,104 - -1.7 5,362,104 - -0.2 5,362,104 - -0.0 5,362,120 - +0.0 5,362,122 - -0.2 5,362,122 - -2.0 5,362,206 + PS417_24715 0.16 -0.3 5,362,207 - PS417_24715 0.16 +0.8 5,362,207 - PS417_24715 0.16 +0.1 5,362,207 - PS417_24715 0.16 +0.2 5,362,370 + PS417_24715 0.32 +0.1 5,362,370 + PS417_24715 0.32 +0.2 5,362,413 + PS417_24715 0.36 +1.1 5,362,413 + PS417_24715 0.36 +1.9 5,362,414 - -0.2 5,362,414 - PS417_24715 0.36 +0.4 5,362,414 - PS417_24715 0.36 +0.4 5,362,419 + PS417_24715 0.37 +0.8 5,362,420 - PS417_24715 0.37 +0.1 5,362,420 - PS417_24715 0.37 +0.3 5,362,800 - PS417_24715 0.75 +0.7 5,362,961 + +0.9 5,362,961 + -0.7 5,362,962 - -0.0 5,362,962 - -0.0 5,363,047 + +0.3 5,363,048 - -0.2 5,363,048 - -0.2
Or see this region's nucleotide sequence