Strain Fitness in Pseudomonas simiae WCS417 around PS417_24175

Experiment: Paraquat dichloride 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.008 mg/ml
5,241,217	+		PS417_24170	0.82	+1.3
5,241,220	+		PS417_24170	0.82	+0.9
5,241,220	+		PS417_24170	0.82	+1.6
5,241,336	-				+0.3
5,241,544	+		PS417_24170	0.88	+1.7
5,241,544	+		PS417_24170	0.88	+1.2
5,241,544	+		PS417_24170	0.88	+1.1
5,241,545	-		PS417_24170	0.88	+1.1
5,241,545	-		PS417_24170	0.88	+0.6
5,241,545	-		PS417_24170	0.88	+1.1
5,241,553	-		PS417_24170	0.88	-0.3
5,241,553	-		PS417_24170	0.88	+0.6
5,241,553	-		PS417_24170	0.88	+1.8
5,241,601	-		PS417_24170	0.89	+1.4
5,241,608	+		PS417_24170	0.89	+2.1
5,241,608	+		PS417_24170	0.89	+0.5
5,241,608	+		PS417_24170	0.89	+1.8
5,241,608	+		PS417_24170	0.89	+0.9
5,241,609	-				+2.3
5,241,609	-				+3.9
5,241,613	-		PS417_24170	0.89	+1.2
5,241,613	-		PS417_24170	0.89	+1.3
5,241,640	+		PS417_24170	0.89	+1.0
5,241,641	-		PS417_24170	0.89	+1.2
5,241,727	+				+1.1
5,241,748	+				-1.0
5,241,748	+				+1.4
5,241,748	+				+1.2
5,241,749	-				+0.8
5,241,891	+				+1.6
5,241,942	+				+1.8
5,241,943	-				+1.2
5,241,943	-				+0.8
5,241,943	-				+0.3
5,241,958	-				-0.0
5,241,961	+				+1.3
5,241,961	+				+1.2
5,241,962	-				+1.5
5,241,962	-				+1.4
5,241,962	-				+1.1
5,241,962	-				+2.5
5,241,965	+				+1.9
5,241,975	+				-1.9
5,241,976	-				+1.1
5,242,158	+				+2.0
5,242,158	+				+1.9
5,242,158	+				+1.4
5,242,158	+				+1.0
5,242,158	+				+1.4
5,242,158	+				+1.6
5,242,159	-				-0.3
5,242,159	-				+1.6
5,242,159	-				+0.9
5,242,159	-				+1.6
5,242,159	-				+1.9
5,242,159	-				+1.1
5,242,350	+				+1.6
5,242,350	+				+1.1
5,242,350	+				+1.3
5,242,350	+				+1.4
5,242,350	+				+1.0
5,242,351	-				+1.2
5,242,461	+		PS417_24175	0.16	+1.0
5,242,461	+		PS417_24175	0.16	+1.2
5,242,485	-		PS417_24175	0.18	+0.3
5,242,505	+		PS417_24175	0.19	+1.3
5,242,816	+		PS417_24175	0.39	+2.1
5,242,816	+				+0.3
5,242,903	-		PS417_24175	0.44	+1.8
5,242,910	+		PS417_24175	0.45	+0.8
5,242,910	+		PS417_24175	0.45	+1.6
5,242,968	+		PS417_24175	0.49	+0.7
5,242,968	+		PS417_24175	0.49	+1.3
5,243,059	+		PS417_24175	0.55	+1.6
5,243,096	+		PS417_24175	0.57	+1.1
5,243,097	-		PS417_24175	0.57	+0.8
5,243,223	-		PS417_24175	0.65	+1.4
5,243,318	+				+1.3
5,243,318	+		PS417_24175	0.71	+1.3
5,243,318	+		PS417_24175	0.71	+0.6
5,243,319	-		PS417_24175	0.71	+0.7
5,243,319	-		PS417_24175	0.71	+0.6
5,243,319	-		PS417_24175	0.71	+1.4
5,243,333	+		PS417_24175	0.72	+0.2
5,243,399	+		PS417_24175	0.76	+1.3
5,243,419	+		PS417_24175	0.78	+1.8
5,243,419	+		PS417_24175	0.78	+1.3
5,243,419	+		PS417_24175	0.78	+0.7
5,243,420	-		PS417_24175	0.78	+1.3
5,243,442	-		PS417_24175	0.79	+1.1
5,243,527	+		PS417_24175	0.85	+1.4
5,243,527	+		PS417_24175	0.85	+1.3
5,243,527	+		PS417_24175	0.85	+1.2
5,243,528	-		PS417_24175	0.85	+1.2
5,243,627	+				+1.2
5,243,628	-				+2.2
5,243,686	+				+1.8
5,243,735	+				+1.5
5,243,736	-				+0.6
5,243,757	+				+1.4
5,243,757	+				+1.0
5,243,757	+				+0.8
5,243,830	+				+1.0
5,243,830	+				+1.0
5,243,909	-				+0.9
5,243,909	-				+1.3
5,244,014	-		PS417_24180	0.12	+1.2
5,244,021	-		PS417_24180	0.12	+1.2
5,244,145	-		PS417_24180	0.18	+1.8
5,244,176	-				+4.1
5,244,234	-				+0.3
5,244,234	-		PS417_24180	0.23	+1.7
5,244,321	+		PS417_24180	0.27	+1.5
5,244,321	+		PS417_24180	0.27	+1.3
5,244,322	-		PS417_24180	0.27	+2.2
5,244,425	-		PS417_24180	0.32	+1.3
5,244,425	-		PS417_24180	0.32	+0.7
5,244,465	+		PS417_24180	0.34	+1.1
5,244,465	+		PS417_24180	0.34	+1.3
5,244,465	+		PS417_24180	0.34	+1.4
5,244,466	-		PS417_24180	0.34	+1.7
5,244,466	-		PS417_24180	0.34	+1.2
5,244,466	-		PS417_24180	0.34	+0.9
5,244,466	-				+0.3
5,244,466	-		PS417_24180	0.34	+1.8
5,244,517	-		PS417_24180	0.36	+1.7
5,244,562	+		PS417_24180	0.39	+1.6
5,244,562	+		PS417_24180	0.39	+1.4
5,244,562	+		PS417_24180	0.39	+2.1
5,244,631	+		PS417_24180	0.42	+0.9
5,244,631	+		PS417_24180	0.42	+0.3
5,244,697	+		PS417_24180	0.45	+0.3
5,244,697	+		PS417_24180	0.45	+1.4
5,244,698	-		PS417_24180	0.45	+1.9
5,244,703	-		PS417_24180	0.45	+1.2
5,244,703	-		PS417_24180	0.45	+2.3
5,244,703	-		PS417_24180	0.45	+1.3
5,244,703	-		PS417_24180	0.45	+1.1
5,244,703	-		PS417_24180	0.45	-0.7
5,244,706	+		PS417_24180	0.45	+0.5
5,244,707	-		PS417_24180	0.46	+1.4
5,244,707	-		PS417_24180	0.46	+1.2
5,244,709	+		PS417_24180	0.46	+1.5
5,244,709	+		PS417_24180	0.46	+0.8
5,244,709	+		PS417_24180	0.46	+1.3
5,244,709	+		PS417_24180	0.46	+0.5
5,244,709	+		PS417_24180	0.46	+2.0
5,244,709	+				+1.0
5,244,710	-		PS417_24180	0.46	+0.9
5,244,710	-		PS417_24180	0.46	+0.7
5,244,710	-		PS417_24180	0.46	+1.3