Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23945 and PS417_23950 are separated by 295 nucleotides PS417_23950 and PS417_23955 are separated by 195 nucleotides PS417_23955 and PS417_23960 are separated by 115 nucleotides
PS417_23945: PS417_23945 - ornithine aminotransferase, at 5,185,381 to 5,186,001
_23945
PS417_23950: PS417_23950 - polynucleotide phosphorylase/polyadenylase, at 5,186,297 to 5,188,402
_23950
PS417_23955: PS417_23955 - 30S ribosomal protein S15, at 5,188,598 to 5,188,867
_23955
PS417_23960: PS417_23960 - pseudouridine synthase, at 5,188,983 to 5,189,900
_23960
Position (kb)
5186
5187
5188
5189 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.334 kb on + strand at 5185.335 kb on - strand at 5185.345 kb on - strand at 5185.498 kb on + strand, within PS417_23945 at 5185.499 kb on - strand, within PS417_23945 at 5185.524 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.693 kb on + strand, within PS417_23945 at 5185.721 kb on - strand, within PS417_23945 at 5185.750 kb on - strand, within PS417_23945 at 5185.750 kb on - strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand, within PS417_23945 at 5185.753 kb on + strand at 5185.753 kb on + strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.754 kb on - strand, within PS417_23945 at 5185.872 kb on + strand, within PS417_23945 at 5185.890 kb on + strand, within PS417_23945 at 5185.981 kb on - strand at 5186.001 kb on + strand at 5186.001 kb on + strand at 5186.002 kb on - strand at 5186.008 kb on - strand at 5186.008 kb on - strand at 5186.008 kb on - strand at 5186.325 kb on - strand at 5186.526 kb on + strand, within PS417_23950 at 5186.526 kb on + strand, within PS417_23950 at 5186.527 kb on - strand, within PS417_23950 at 5188.439 kb on - strand at 5188.439 kb on - strand at 5188.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 5,185,334 + +0.2 5,185,334 + -1.0 5,185,334 + -0.3 5,185,334 + +0.2 5,185,334 + -0.5 5,185,334 + +1.3 5,185,334 + -0.6 5,185,335 - -0.1 5,185,345 - +0.1 5,185,498 + PS417_23945 0.19 -0.4 5,185,499 - PS417_23945 0.19 +0.3 5,185,524 + PS417_23945 0.23 -0.2 5,185,693 + PS417_23945 0.50 +0.9 5,185,693 + PS417_23945 0.50 -1.7 5,185,693 + PS417_23945 0.50 -0.5 5,185,721 - PS417_23945 0.55 -1.0 5,185,750 - PS417_23945 0.59 -0.7 5,185,750 - PS417_23945 0.59 +0.4 5,185,753 + PS417_23945 0.60 -0.3 5,185,753 + PS417_23945 0.60 -0.7 5,185,753 + PS417_23945 0.60 +0.2 5,185,753 + +0.7 5,185,753 + PS417_23945 0.60 +0.0 5,185,754 - PS417_23945 0.60 +1.6 5,185,754 - PS417_23945 0.60 -1.5 5,185,754 - PS417_23945 0.60 -1.1 5,185,754 - PS417_23945 0.60 -1.3 5,185,872 + PS417_23945 0.79 +0.1 5,185,890 + PS417_23945 0.82 -0.0 5,185,981 - +0.6 5,186,001 + +0.1 5,186,001 + +0.9 5,186,002 - -0.1 5,186,008 - -1.4 5,186,008 - -0.4 5,186,008 - -0.4 5,186,325 - -1.3 5,186,526 + PS417_23950 0.11 -1.4 5,186,526 + PS417_23950 0.11 -1.0 5,186,527 - PS417_23950 0.11 -2.0 5,188,439 - -3.1 5,188,439 - +0.3 5,188,496 - -0.0
Or see this region's nucleotide sequence