Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02355 and PS417_02360 are separated by 166 nucleotides PS417_02360 and PS417_02365 overlap by 32 nucleotides PS417_02365 and PS417_02370 are separated by 193 nucleotides
PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270
_02355
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
PS417_02365: PS417_02365 - hypothetical protein, at 541,695 to 542,441
_02365
PS417_02370: PS417_02370 - ADP-ribose pyrophosphatase, at 542,635 to 543,252
_02370
Position (kb) 540
541
542 Strain fitness (log2 ratio) -1
0
1 at 539.479 kb on + strand, within PS417_02355 at 539.518 kb on + strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.519 kb on - strand, within PS417_02355 at 539.741 kb on - strand, within PS417_02355 at 539.912 kb on - strand, within PS417_02355 at 540.055 kb on + strand, within PS417_02355 at 540.339 kb on - strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.871 kb on - strand, within PS417_02360 at 540.871 kb on - strand, within PS417_02360 at 541.211 kb on + strand, within PS417_02360 at 541.780 kb on + strand, within PS417_02365 at 541.781 kb on - strand, within PS417_02365 at 542.008 kb on + strand, within PS417_02365 at 542.060 kb on - strand, within PS417_02365 at 542.103 kb on + strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.463 kb on - strand at 542.516 kb on - strand at 542.635 kb on - strand at 542.707 kb on + strand, within PS417_02370 at 542.708 kb on - strand, within PS417_02370
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 539,479 + PS417_02355 0.58 -0.3 539,518 + PS417_02355 0.60 -1.7 539,519 - PS417_02355 0.60 +0.9 539,519 - PS417_02355 0.60 +0.4 539,741 - PS417_02355 0.72 -0.7 539,912 - PS417_02355 0.81 +0.1 540,055 + PS417_02355 0.89 +0.7 540,339 - +0.8 540,458 + -0.2 540,459 - +1.3 540,871 - PS417_02360 0.34 -0.6 540,871 - PS417_02360 0.34 -1.6 541,211 + PS417_02360 0.60 -0.2 541,780 + PS417_02365 0.11 +1.2 541,781 - PS417_02365 0.12 +0.0 542,008 + PS417_02365 0.42 -0.0 542,060 - PS417_02365 0.49 +0.7 542,103 + PS417_02365 0.55 -1.4 542,363 - PS417_02365 0.89 +0.2 542,363 - PS417_02365 0.89 +0.8 542,463 - +0.4 542,516 - -0.4 542,635 - +0.3 542,707 + PS417_02370 0.12 -0.8 542,708 - PS417_02370 0.12 +0.6
Or see this region's nucleotide sequence