Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21060 and PS417_21065 are separated by 119 nucleotides PS417_21065 and PS417_21070 are separated by 9 nucleotides
PS417_21060: PS417_21060 - 2-methylcitrate dehydratase, at 4,581,832 to 4,583,316
_21060
PS417_21065: PS417_21065 - 3-methylitaconate isomerase, at 4,583,436 to 4,584,626
_21065
PS417_21070: PS417_21070 - aconitate hydratase, at 4,584,636 to 4,587,230
_21070
Position (kb)
4583
4584
4585 Strain fitness (log2 ratio)
-1
0
1
2 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.489 kb on - strand, within PS417_21060 at 4582.542 kb on - strand, within PS417_21060 at 4582.798 kb on + strand, within PS417_21060 at 4582.798 kb on + strand, within PS417_21060 at 4582.798 kb on + strand, within PS417_21060 at 4582.798 kb on + strand, within PS417_21060 at 4582.799 kb on - strand, within PS417_21060 at 4582.799 kb on - strand, within PS417_21060 at 4582.799 kb on - strand, within PS417_21060 at 4582.799 kb on - strand, within PS417_21060 at 4583.012 kb on + strand, within PS417_21060 at 4583.237 kb on + strand at 4583.238 kb on - strand at 4583.250 kb on - strand at 4583.335 kb on - strand at 4583.479 kb on - strand at 4583.479 kb on - strand at 4583.764 kb on + strand, within PS417_21065 at 4583.765 kb on - strand, within PS417_21065 at 4584.590 kb on - strand at 4584.590 kb on - strand at 4584.601 kb on - strand at 4584.701 kb on - strand at 4584.824 kb on - strand at 4584.824 kb on - strand at 4585.216 kb on + strand, within PS417_21070 at 4585.409 kb on - strand, within PS417_21070 at 4585.487 kb on - strand, within PS417_21070 at 4585.487 kb on - strand, within PS417_21070
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,582,452 - PS417_21060 0.42 +0.7 4,582,452 - PS417_21060 0.42 +0.1 4,582,452 - PS417_21060 0.42 -0.8 4,582,452 - PS417_21060 0.42 -0.2 4,582,452 - PS417_21060 0.42 +0.5 4,582,489 - PS417_21060 0.44 -0.2 4,582,542 - PS417_21060 0.48 -0.2 4,582,798 + PS417_21060 0.65 +0.3 4,582,798 + PS417_21060 0.65 -0.1 4,582,798 + PS417_21060 0.65 +0.3 4,582,798 + PS417_21060 0.65 -0.2 4,582,799 - PS417_21060 0.65 +0.2 4,582,799 - PS417_21060 0.65 -1.1 4,582,799 - PS417_21060 0.65 -0.4 4,582,799 - PS417_21060 0.65 +1.0 4,583,012 + PS417_21060 0.79 -0.4 4,583,237 + +1.1 4,583,238 - -0.1 4,583,250 - +0.3 4,583,335 - +0.4 4,583,479 - -0.5 4,583,479 - +0.9 4,583,764 + PS417_21065 0.28 -1.2 4,583,765 - PS417_21065 0.28 -0.4 4,584,590 - +1.8 4,584,590 - +0.4 4,584,601 - +0.1 4,584,701 - +0.2 4,584,824 - +0.3 4,584,824 - -0.5 4,585,216 + PS417_21070 0.22 +1.1 4,585,409 - PS417_21070 0.30 +0.0 4,585,487 - PS417_21070 0.33 -0.6 4,585,487 - PS417_21070 0.33 +2.4
Or see this region's nucleotide sequence