Strain Fitness in Pseudomonas simiae WCS417 around PS417_21065

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21060 and PS417_21065 are separated by 119 nucleotidesPS417_21065 and PS417_21070 are separated by 9 nucleotides PS417_21060: PS417_21060 - 2-methylcitrate dehydratase, at 4,581,832 to 4,583,316 _21060 PS417_21065: PS417_21065 - 3-methylitaconate isomerase, at 4,583,436 to 4,584,626 _21065 PS417_21070: PS417_21070 - aconitate hydratase, at 4,584,636 to 4,587,230 _21070 Position (kb) 4583 4584 4585Strain fitness (log2 ratio) -1 0 1 2at 4582.452 kb on - strand, within PS417_21060at 4582.452 kb on - strand, within PS417_21060at 4582.452 kb on - strand, within PS417_21060at 4582.452 kb on - strand, within PS417_21060at 4582.452 kb on - strand, within PS417_21060at 4582.489 kb on - strand, within PS417_21060at 4582.542 kb on - strand, within PS417_21060at 4582.798 kb on + strand, within PS417_21060at 4582.798 kb on + strand, within PS417_21060at 4582.798 kb on + strand, within PS417_21060at 4582.798 kb on + strand, within PS417_21060at 4582.799 kb on - strand, within PS417_21060at 4582.799 kb on - strand, within PS417_21060at 4582.799 kb on - strand, within PS417_21060at 4582.799 kb on - strand, within PS417_21060at 4583.012 kb on + strand, within PS417_21060at 4583.237 kb on + strandat 4583.238 kb on - strandat 4583.250 kb on - strandat 4583.335 kb on - strandat 4583.479 kb on - strandat 4583.479 kb on - strandat 4583.764 kb on + strand, within PS417_21065at 4583.765 kb on - strand, within PS417_21065at 4584.590 kb on - strandat 4584.590 kb on - strandat 4584.601 kb on - strandat 4584.701 kb on - strandat 4584.824 kb on - strandat 4584.824 kb on - strandat 4585.216 kb on + strand, within PS417_21070at 4585.409 kb on - strand, within PS417_21070at 4585.487 kb on - strand, within PS417_21070at 4585.487 kb on - strand, within PS417_21070

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,582,452 - PS417_21060 0.42 +0.7
4,582,452 - PS417_21060 0.42 +0.1
4,582,452 - PS417_21060 0.42 -0.8
4,582,452 - PS417_21060 0.42 -0.2
4,582,452 - PS417_21060 0.42 +0.5
4,582,489 - PS417_21060 0.44 -0.2
4,582,542 - PS417_21060 0.48 -0.2
4,582,798 + PS417_21060 0.65 +0.3
4,582,798 + PS417_21060 0.65 -0.1
4,582,798 + PS417_21060 0.65 +0.3
4,582,798 + PS417_21060 0.65 -0.2
4,582,799 - PS417_21060 0.65 +0.2
4,582,799 - PS417_21060 0.65 -1.1
4,582,799 - PS417_21060 0.65 -0.4
4,582,799 - PS417_21060 0.65 +1.0
4,583,012 + PS417_21060 0.79 -0.4
4,583,237 + +1.1
4,583,238 - -0.1
4,583,250 - +0.3
4,583,335 - +0.4
4,583,479 - -0.5
4,583,479 - +0.9
4,583,764 + PS417_21065 0.28 -1.2
4,583,765 - PS417_21065 0.28 -0.4
4,584,590 - +1.8
4,584,590 - +0.4
4,584,601 - +0.1
4,584,701 - +0.2
4,584,824 - +0.3
4,584,824 - -0.5
4,585,216 + PS417_21070 0.22 +1.1
4,585,409 - PS417_21070 0.30 +0.0
4,585,487 - PS417_21070 0.33 -0.6
4,585,487 - PS417_21070 0.33 +2.4

Or see this region's nucleotide sequence