Strain Fitness in Pseudomonas simiae WCS417 around PS417_19500

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19495 and PS417_19500 are separated by 125 nucleotidesPS417_19500 and PS417_19505 are separated by 82 nucleotides PS417_19495: PS417_19495 - N-acyl-L-amino acid amidohydrolase, at 4,226,878 to 4,228,224 _19495 PS417_19500: PS417_19500 - antibiotic synthesis protein MbtH, at 4,228,350 to 4,228,574 _19500 PS417_19505: PS417_19505 - 2,4-diaminobutyrate 4-aminotransferase, at 4,228,657 to 4,230,051 _19505 Position (kb) 4228 4229Strain fitness (log2 ratio) -1 0 1at 4227.394 kb on + strand, within PS417_19495at 4227.394 kb on + strand, within PS417_19495at 4227.394 kb on + strand, within PS417_19495at 4227.394 kb on + strand, within PS417_19495at 4227.769 kb on + strand, within PS417_19495at 4227.855 kb on - strand, within PS417_19495at 4227.855 kb on - strand, within PS417_19495at 4228.198 kb on + strandat 4228.199 kb on - strandat 4228.426 kb on + strand, within PS417_19500at 4228.427 kb on - strand, within PS417_19500at 4228.510 kb on + strand, within PS417_19500at 4228.563 kb on + strandat 4228.564 kb on - strandat 4228.625 kb on + strandat 4228.625 kb on + strandat 4228.626 kb on - strandat 4228.626 kb on - strandat 4229.405 kb on + strand, within PS417_19505

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,227,394 + PS417_19495 0.38 +0.4
4,227,394 + PS417_19495 0.38 -1.6
4,227,394 + PS417_19495 0.38 +0.0
4,227,394 + PS417_19495 0.38 -0.2
4,227,769 + PS417_19495 0.66 -0.3
4,227,855 - PS417_19495 0.73 -0.3
4,227,855 - PS417_19495 0.73 -1.1
4,228,198 + -0.0
4,228,199 - +0.3
4,228,426 + PS417_19500 0.34 -1.3
4,228,427 - PS417_19500 0.34 -0.7
4,228,510 + PS417_19500 0.71 -0.5
4,228,563 + -0.1
4,228,564 - +1.0
4,228,625 + +0.4
4,228,625 + -0.5
4,228,626 - +0.0
4,228,626 - -0.0
4,229,405 + PS417_19505 0.54 +1.5

Or see this region's nucleotide sequence