Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17640 and PS417_17645 overlap by 8 nucleotides PS417_17645 and PS417_17650 are separated by 104 nucleotides PS417_17650 and PS417_17655 are separated by 107 nucleotides
PS417_17640: PS417_17640 - macrolide ABC transporter ATP-binding protein, at 3,849,924 to 3,851,894
_17640
PS417_17645: PS417_17645 - RND transporter, at 3,851,887 to 3,853,290
_17645
PS417_17650: PS417_17650 - proteinase, at 3,853,395 to 3,854,138
_17650
PS417_17655: PS417_17655 - GntR family transcriptional regulator, at 3,854,246 to 3,855,013
_17655
Position (kb)
3851
3852
3853
3854 Strain fitness (log2 ratio)
-1
0
1 at 3850.889 kb on + strand, within PS417_17640 at 3850.893 kb on + strand, within PS417_17640 at 3851.040 kb on + strand, within PS417_17640 at 3851.040 kb on + strand, within PS417_17640 at 3851.049 kb on + strand, within PS417_17640 at 3851.050 kb on - strand, within PS417_17640 at 3851.087 kb on + strand, within PS417_17640 at 3851.112 kb on + strand at 3851.349 kb on + strand, within PS417_17640 at 3851.349 kb on + strand, within PS417_17640 at 3851.350 kb on - strand, within PS417_17640 at 3851.350 kb on - strand, within PS417_17640 at 3851.361 kb on + strand, within PS417_17640 at 3851.362 kb on - strand, within PS417_17640 at 3851.458 kb on - strand at 3851.579 kb on + strand, within PS417_17640 at 3851.580 kb on - strand, within PS417_17640 at 3852.503 kb on + strand, within PS417_17645 at 3852.892 kb on + strand, within PS417_17645 at 3852.995 kb on - strand, within PS417_17645 at 3853.229 kb on + strand at 3853.330 kb on + strand at 3853.331 kb on - strand at 3853.682 kb on + strand, within PS417_17650 at 3853.738 kb on - strand, within PS417_17650 at 3853.848 kb on + strand, within PS417_17650 at 3853.885 kb on - strand, within PS417_17650 at 3854.246 kb on - strand at 3854.246 kb on - strand at 3854.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,850,889 + PS417_17640 0.49 +0.4 3,850,893 + PS417_17640 0.49 +0.8 3,851,040 + PS417_17640 0.57 -0.8 3,851,040 + PS417_17640 0.57 -0.2 3,851,049 + PS417_17640 0.57 -0.5 3,851,050 - PS417_17640 0.57 +1.3 3,851,087 + PS417_17640 0.59 +0.5 3,851,112 + +0.5 3,851,349 + PS417_17640 0.72 -0.5 3,851,349 + PS417_17640 0.72 -0.7 3,851,350 - PS417_17640 0.72 -0.2 3,851,350 - PS417_17640 0.72 -0.3 3,851,361 + PS417_17640 0.73 -0.6 3,851,362 - PS417_17640 0.73 +0.0 3,851,458 - -0.1 3,851,579 + PS417_17640 0.84 -0.3 3,851,580 - PS417_17640 0.84 +0.5 3,852,503 + PS417_17645 0.44 -1.0 3,852,892 + PS417_17645 0.72 +0.3 3,852,995 - PS417_17645 0.79 +0.8 3,853,229 + +0.0 3,853,330 + -0.2 3,853,331 - +0.0 3,853,682 + PS417_17650 0.39 -1.4 3,853,738 - PS417_17650 0.46 -0.4 3,853,848 + PS417_17650 0.61 +0.1 3,853,885 - PS417_17650 0.66 +0.2 3,854,246 - -0.5 3,854,246 - -0.4 3,854,251 - +0.4
Or see this region's nucleotide sequence