Strain Fitness in Pseudomonas simiae WCS417 around PS417_15750

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15740 and PS417_15745 are separated by 73 nucleotidesPS417_15745 and PS417_15750 overlap by 7 nucleotidesPS417_15750 and PS417_15755 are separated by 10 nucleotides PS417_15740: PS417_15740 - hypothetical protein, at 3,452,674 to 3,453,321 _15740 PS417_15745: PS417_15745 - lipid carrier protein, at 3,453,395 to 3,453,856 _15745 PS417_15750: PS417_15750 - protease, at 3,453,850 to 3,454,740 _15750 PS417_15755: PS417_15755 - protease, at 3,454,751 to 3,455,746 _15755 Position (kb) 3453 3454 3455Strain fitness (log2 ratio) -2 -1 0 1 2at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.908 kb on + strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3452.909 kb on - strand, within PS417_15740at 3453.176 kb on - strand, within PS417_15740at 3453.183 kb on + strand, within PS417_15740at 3453.183 kb on + strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.199 kb on - strand, within PS417_15740at 3453.252 kb on + strandat 3453.253 kb on - strand, within PS417_15740at 3453.463 kb on + strand, within PS417_15745at 3453.539 kb on - strand, within PS417_15745at 3453.539 kb on - strandat 3453.752 kb on - strandat 3454.142 kb on + strandat 3454.382 kb on + strand, within PS417_15750at 3454.543 kb on + strand, within PS417_15750at 3454.644 kb on - strand, within PS417_15750at 3454.680 kb on - strandat 3454.710 kb on - strandat 3454.909 kb on - strand, within PS417_15755at 3455.206 kb on - strand, within PS417_15755at 3455.206 kb on - strand, within PS417_15755at 3455.443 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.563 kb on - strand, within PS417_15755at 3455.669 kb on + strandat 3455.670 kb on - strandat 3455.673 kb on + strandat 3455.674 kb on - strandat 3455.674 kb on - strandat 3455.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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3,452,908 + PS417_15740 0.36 +0.5
3,452,908 + PS417_15740 0.36 +0.6
3,452,908 + PS417_15740 0.36 -0.2
3,452,908 + PS417_15740 0.36 -1.1
3,452,908 + PS417_15740 0.36 +1.2
3,452,908 + PS417_15740 0.36 +0.5
3,452,909 - PS417_15740 0.36 -0.1
3,452,909 - PS417_15740 0.36 +0.3
3,452,909 - PS417_15740 0.36 +1.8
3,452,909 - PS417_15740 0.36 -1.0
3,453,176 - PS417_15740 0.77 -0.2
3,453,183 + PS417_15740 0.79 -0.1
3,453,183 + PS417_15740 0.79 -0.4
3,453,199 - PS417_15740 0.81 -0.4
3,453,199 - PS417_15740 0.81 -1.3
3,453,199 - PS417_15740 0.81 -1.0
3,453,252 + -0.8
3,453,253 - PS417_15740 0.89 -0.3
3,453,463 + PS417_15745 0.15 -0.1
3,453,539 - PS417_15745 0.31 -0.6
3,453,539 - -1.5
3,453,752 - -0.8
3,454,142 + -0.8
3,454,382 + PS417_15750 0.60 -0.8
3,454,543 + PS417_15750 0.78 -0.3
3,454,644 - PS417_15750 0.89 -1.0
3,454,680 - +1.0
3,454,710 - +0.5
3,454,909 - PS417_15755 0.16 +0.5
3,455,206 - PS417_15755 0.46 -0.2
3,455,206 - PS417_15755 0.46 +0.4
3,455,443 - PS417_15755 0.69 -0.4
3,455,563 - PS417_15755 0.82 +0.3
3,455,563 - PS417_15755 0.82 +0.4
3,455,563 - PS417_15755 0.82 -0.8
3,455,563 - PS417_15755 0.82 +0.6
3,455,563 - PS417_15755 0.82 +0.8
3,455,669 + +0.4
3,455,670 - +0.8
3,455,673 + -1.8
3,455,674 - -0.9
3,455,674 - -0.6
3,455,674 - -1.1

Or see this region's nucleotide sequence