Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14400 and PS417_14405 are separated by 111 nucleotides PS417_14405 and PS417_14410 overlap by 4 nucleotides PS417_14410 and PS417_14415 overlap by 14 nucleotides PS417_14415 and PS417_14420 overlap by 4 nucleotides
PS417_14400: PS417_14400 - hypothetical protein, at 3,148,935 to 3,149,123
_14400
PS417_14405: PS417_14405 - ABC transporter permease, at 3,149,235 to 3,149,996
_14405
PS417_14410: PS417_14410 - ABC transporter substrate-binding protein, at 3,149,993 to 3,151,192
_14410
PS417_14415: PS417_14415 - ABC transporter ATP-binding protein, at 3,151,179 to 3,151,982
_14415
PS417_14420: PS417_14420 - acyl-CoA dehydrogenase, at 3,151,979 to 3,153,040
_14420
Position (kb)
3149
3150
3151
3152 Strain fitness (log2 ratio)
-1
0
1
2 at 3149.047 kb on + strand, within PS417_14400 at 3149.074 kb on - strand, within PS417_14400 at 3149.365 kb on + strand, within PS417_14405 at 3149.366 kb on - strand, within PS417_14405 at 3149.366 kb on - strand, within PS417_14405 at 3149.368 kb on + strand, within PS417_14405 at 3149.443 kb on - strand, within PS417_14405 at 3149.811 kb on + strand, within PS417_14405 at 3149.811 kb on + strand, within PS417_14405 at 3149.812 kb on - strand, within PS417_14405 at 3149.821 kb on + strand, within PS417_14405 at 3150.177 kb on - strand, within PS417_14410 at 3150.271 kb on - strand, within PS417_14410 at 3150.271 kb on - strand, within PS417_14410 at 3150.271 kb on - strand, within PS417_14410 at 3150.271 kb on - strand, within PS417_14410 at 3151.253 kb on + strand at 3151.253 kb on + strand at 3151.359 kb on + strand, within PS417_14415 at 3151.982 kb on + strand at 3151.982 kb on + strand at 3151.982 kb on + strand at 3151.983 kb on - strand at 3151.983 kb on - strand at 3151.983 kb on - strand at 3152.097 kb on + strand, within PS417_14420
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 3,149,047 + PS417_14400 0.59 +0.8 3,149,074 - PS417_14400 0.74 +0.5 3,149,365 + PS417_14405 0.17 -0.2 3,149,366 - PS417_14405 0.17 -0.7 3,149,366 - PS417_14405 0.17 +1.1 3,149,368 + PS417_14405 0.17 -0.5 3,149,443 - PS417_14405 0.27 +0.7 3,149,811 + PS417_14405 0.76 +0.8 3,149,811 + PS417_14405 0.76 -0.2 3,149,812 - PS417_14405 0.76 -0.3 3,149,821 + PS417_14405 0.77 -1.2 3,150,177 - PS417_14410 0.15 +1.7 3,150,271 - PS417_14410 0.23 +0.6 3,150,271 - PS417_14410 0.23 +0.6 3,150,271 - PS417_14410 0.23 +0.0 3,150,271 - PS417_14410 0.23 -0.1 3,151,253 + +0.4 3,151,253 + -1.2 3,151,359 + PS417_14415 0.22 +2.4 3,151,982 + +0.5 3,151,982 + -0.3 3,151,982 + +0.7 3,151,983 - -1.5 3,151,983 - -0.3 3,151,983 - -0.8 3,152,097 + PS417_14420 0.11 -0.3
Or see this region's nucleotide sequence