Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01265 and PS417_01270 overlap by 4 nucleotides PS417_01270 and PS417_01275 are separated by 97 nucleotides PS417_01275 and PS417_01280 are separated by 132 nucleotides PS417_01280 and PS417_01285 are separated by 141 nucleotides
PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949
_01265
PS417_01270: PS417_01270 - iron ABC transporter substrate-binding protein, at 276,946 to 277,785
_01270
PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770
_01275
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1 at 276.897 kb on + strand at 276.897 kb on + strand at 277.283 kb on + strand, within PS417_01270 at 277.367 kb on - strand, within PS417_01270 at 277.709 kb on + strand at 277.710 kb on - strand at 277.794 kb on - strand at 278.266 kb on - strand, within PS417_01275 at 278.318 kb on - strand at 278.335 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.548 kb on - strand, within PS417_01275 at 278.808 kb on + strand at 278.902 kb on + strand at 278.902 kb on + strand at 278.903 kb on - strand at 278.908 kb on + strand at 279.159 kb on + strand, within PS417_01280 at 279.223 kb on + strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 276,897 + +1.5 276,897 + +0.1 277,283 + PS417_01270 0.40 -0.7 277,367 - PS417_01270 0.50 -0.2 277,709 + -1.1 277,710 - -0.4 277,794 - +0.2 278,266 - PS417_01275 0.43 -0.6 278,318 - -0.1 278,335 - PS417_01275 0.51 -1.9 278,448 - PS417_01275 0.64 -0.9 278,448 - PS417_01275 0.64 -0.8 278,548 - PS417_01275 0.75 -0.1 278,808 + +0.1 278,902 + +0.5 278,902 + +1.5 278,903 - +0.4 278,908 + -0.4 279,159 + PS417_01280 0.58 +0.0 279,223 + PS417_01280 0.73 +0.9 279,258 - PS417_01280 0.80 -0.1 279,258 - PS417_01280 0.80 -1.7 279,342 - -0.3 279,420 - +0.2 279,511 - +0.1
Or see this region's nucleotide sequence