Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01255 and PS417_01260 are separated by 25 nucleotides PS417_01260 and PS417_01265 are separated by 203 nucleotides PS417_01265 and PS417_01270 overlap by 4 nucleotides PS417_01270 and PS417_01275 are separated by 97 nucleotides
PS417_01255: PS417_01255 - thioesterase, at 273,461 to 273,892
_01255
PS417_01260: PS417_01260 - hypothetical protein, at 273,918 to 274,397
_01260
PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949
_01265
PS417_01270: PS417_01270 - iron ABC transporter substrate-binding protein, at 276,946 to 277,785
_01270
PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770
_01275
Position (kb) 274
275
276
277 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.671 kb on + strand, within PS417_01255 at 273.672 kb on - strand, within PS417_01255 at 273.737 kb on - strand, within PS417_01255 at 273.737 kb on - strand, within PS417_01255 at 273.737 kb on - strand, within PS417_01255 at 273.737 kb on - strand, within PS417_01255 at 273.737 kb on - strand, within PS417_01255 at 273.750 kb on - strand, within PS417_01255 at 273.905 kb on - strand at 273.905 kb on - strand at 273.958 kb on + strand at 273.995 kb on - strand, within PS417_01260 at 274.054 kb on + strand, within PS417_01260 at 274.054 kb on + strand, within PS417_01260 at 274.054 kb on + strand, within PS417_01260 at 274.054 kb on + strand at 274.055 kb on - strand, within PS417_01260 at 274.055 kb on - strand, within PS417_01260 at 274.055 kb on - strand, within PS417_01260 at 274.055 kb on - strand, within PS417_01260 at 274.055 kb on - strand, within PS417_01260 at 274.059 kb on - strand, within PS417_01260 at 274.135 kb on - strand, within PS417_01260 at 274.290 kb on + strand, within PS417_01260 at 274.291 kb on - strand, within PS417_01260 at 274.291 kb on - strand, within PS417_01260 at 274.399 kb on - strand at 274.522 kb on + strand at 274.523 kb on - strand at 274.603 kb on - strand at 274.603 kb on - strand at 274.603 kb on - strand at 274.678 kb on + strand at 274.734 kb on + strand at 274.735 kb on - strand at 274.760 kb on - strand at 274.853 kb on + strand, within PS417_01265 at 274.932 kb on + strand, within PS417_01265 at 274.932 kb on + strand, within PS417_01265 at 274.933 kb on - strand, within PS417_01265 at 274.933 kb on - strand, within PS417_01265 at 274.933 kb on - strand, within PS417_01265 at 274.948 kb on - strand, within PS417_01265 at 275.107 kb on - strand, within PS417_01265 at 275.190 kb on + strand, within PS417_01265 at 275.225 kb on - strand, within PS417_01265 at 275.542 kb on + strand, within PS417_01265 at 275.542 kb on + strand, within PS417_01265 at 275.542 kb on + strand, within PS417_01265 at 275.543 kb on - strand, within PS417_01265 at 275.546 kb on + strand, within PS417_01265 at 275.546 kb on + strand, within PS417_01265 at 275.697 kb on - strand, within PS417_01265 at 275.697 kb on - strand, within PS417_01265 at 275.697 kb on - strand, within PS417_01265 at 275.697 kb on - strand, within PS417_01265 at 275.856 kb on + strand, within PS417_01265 at 275.856 kb on + strand, within PS417_01265 at 275.856 kb on + strand, within PS417_01265 at 275.856 kb on + strand, within PS417_01265 at 275.857 kb on - strand, within PS417_01265 at 275.946 kb on + strand, within PS417_01265 at 275.947 kb on - strand, within PS417_01265 at 276.433 kb on - strand, within PS417_01265 at 276.433 kb on - strand, within PS417_01265 at 276.438 kb on + strand, within PS417_01265 at 276.439 kb on - strand, within PS417_01265 at 276.472 kb on - strand, within PS417_01265 at 276.576 kb on + strand, within PS417_01265 at 276.606 kb on + strand, within PS417_01265 at 276.897 kb on + strand at 276.897 kb on + strand at 277.283 kb on + strand, within PS417_01270 at 277.367 kb on - strand, within PS417_01270 at 277.709 kb on + strand at 277.710 kb on - strand at 277.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 273,671 + PS417_01255 0.49 -0.1 273,672 - PS417_01255 0.49 +0.8 273,737 - PS417_01255 0.64 +0.1 273,737 - PS417_01255 0.64 -0.2 273,737 - PS417_01255 0.64 -0.1 273,737 - PS417_01255 0.64 -0.4 273,737 - PS417_01255 0.64 -0.3 273,750 - PS417_01255 0.67 -0.3 273,905 - -0.7 273,905 - +0.1 273,958 + -1.5 273,995 - PS417_01260 0.16 +0.9 274,054 + PS417_01260 0.28 -0.5 274,054 + PS417_01260 0.28 +0.2 274,054 + PS417_01260 0.28 -0.0 274,054 + +0.7 274,055 - PS417_01260 0.29 -0.1 274,055 - PS417_01260 0.29 +0.1 274,055 - PS417_01260 0.29 +0.3 274,055 - PS417_01260 0.29 -0.5 274,055 - PS417_01260 0.29 -2.1 274,059 - PS417_01260 0.29 -0.5 274,135 - PS417_01260 0.45 +0.6 274,290 + PS417_01260 0.78 -0.2 274,291 - PS417_01260 0.78 +0.1 274,291 - PS417_01260 0.78 -0.1 274,399 - -0.7 274,522 + -0.7 274,523 - +1.9 274,603 - -0.3 274,603 - +0.1 274,603 - -0.5 274,678 + +1.2 274,734 + -1.1 274,735 - -0.3 274,760 - +0.2 274,853 + PS417_01265 0.11 +0.7 274,932 + PS417_01265 0.14 -0.3 274,932 + PS417_01265 0.14 -1.4 274,933 - PS417_01265 0.14 -0.8 274,933 - PS417_01265 0.14 -0.7 274,933 - PS417_01265 0.14 -1.5 274,948 - PS417_01265 0.15 -1.6 275,107 - PS417_01265 0.22 -2.4 275,190 + PS417_01265 0.25 +1.8 275,225 - PS417_01265 0.27 -2.0 275,542 + PS417_01265 0.40 +0.9 275,542 + PS417_01265 0.40 +1.4 275,542 + PS417_01265 0.40 -1.6 275,543 - PS417_01265 0.40 -0.4 275,546 + PS417_01265 0.40 -0.6 275,546 + PS417_01265 0.40 -2.4 275,697 - PS417_01265 0.47 -1.4 275,697 - PS417_01265 0.47 -3.3 275,697 - PS417_01265 0.47 +0.1 275,697 - PS417_01265 0.47 -0.8 275,856 + PS417_01265 0.53 -1.1 275,856 + PS417_01265 0.53 -0.4 275,856 + PS417_01265 0.53 -0.8 275,856 + PS417_01265 0.53 -1.0 275,857 - PS417_01265 0.53 -0.7 275,946 + PS417_01265 0.57 -1.2 275,947 - PS417_01265 0.57 +1.5 276,433 - PS417_01265 0.78 -0.1 276,433 - PS417_01265 0.78 -0.8 276,438 + PS417_01265 0.78 +0.8 276,439 - PS417_01265 0.78 -0.4 276,472 - PS417_01265 0.80 -2.3 276,576 + PS417_01265 0.84 -0.8 276,606 + PS417_01265 0.85 -0.9 276,897 + +1.5 276,897 + +0.1 277,283 + PS417_01270 0.40 -0.7 277,367 - PS417_01270 0.50 -0.2 277,709 + -1.1 277,710 - -0.4 277,794 - +0.2
Or see this region's nucleotide sequence