Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11995 and PS417_12000 overlap by 4 nucleotides PS417_12000 and PS417_12005 overlap by 4 nucleotides PS417_12005 and PS417_12010 are separated by 56 nucleotides PS417_12010 and PS417_12015 are separated by 56 nucleotides
PS417_11995: PS417_11995 - RNA polymerase sigma factor, at 2,608,003 to 2,608,581
_11995
PS417_12000: PS417_12000 - hypothetical protein, at 2,608,578 to 2,609,009
_12000
PS417_12005: PS417_12005 - hypothetical protein, at 2,609,006 to 2,609,494
_12005
PS417_12010: PS417_12010 - SCP-2 family sterol carrier protein, at 2,609,551 to 2,609,865
_12010
PS417_12015: PS417_12015 - phosphoglycerate mutase, at 2,609,922 to 2,610,632
_12015
Position (kb)
2609
2610 Strain fitness (log2 ratio)
-1
0
1 at 2608.037 kb on + strand at 2608.038 kb on - strand at 2608.038 kb on - strand at 2608.429 kb on + strand, within PS417_11995 at 2609.167 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.210 kb on - strand, within PS417_12005 at 2609.432 kb on + strand, within PS417_12005 at 2609.493 kb on - strand at 2609.842 kb on + strand at 2609.884 kb on + strand at 2610.229 kb on + strand, within PS417_12015 at 2610.230 kb on - strand, within PS417_12015 at 2610.270 kb on - strand, within PS417_12015
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 2,608,037 + -1.0 2,608,038 - -0.5 2,608,038 - +0.2 2,608,429 + PS417_11995 0.74 +0.1 2,609,167 - PS417_12005 0.33 -1.4 2,609,210 - PS417_12005 0.42 -0.2 2,609,210 - PS417_12005 0.42 -1.0 2,609,432 + PS417_12005 0.87 -1.3 2,609,493 - -0.2 2,609,842 + -0.6 2,609,884 + +0.3 2,610,229 + PS417_12015 0.43 -0.9 2,610,230 - PS417_12015 0.43 +0.9 2,610,270 - PS417_12015 0.49 -0.3
Or see this region's nucleotide sequence