Strain Fitness in Pseudomonas simiae WCS417 around PS417_11765

Experiment: Paraquat dichloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_11760 and PS417_11765 are separated by 309 nucleotidesPS417_11765 and PS417_11770 are separated by 26 nucleotides PS417_11760: PS417_11760 - Fis family transcriptional regulator, at 2,558,185 to 2,560,050 _11760 PS417_11765: PS417_11765 - ABC transporter substrate-binding protein, at 2,560,360 to 2,561,337 _11765 PS417_11770: PS417_11770 - pyruvate dehydrogenase, at 2,561,364 to 2,562,383 _11770 Position (kb) 2560 2561 2562Strain fitness (log2 ratio) -2 -1 0 1at 2559.690 kb on - strand, within PS417_11760at 2560.051 kb on - strandat 2560.079 kb on + strandat 2560.079 kb on + strandat 2560.092 kb on - strandat 2560.307 kb on + strandat 2560.308 kb on - strandat 2560.308 kb on - strandat 2560.399 kb on + strandat 2560.400 kb on - strandat 2560.621 kb on + strand, within PS417_11765at 2560.622 kb on - strand, within PS417_11765at 2560.641 kb on - strand, within PS417_11765at 2560.892 kb on - strand, within PS417_11765at 2561.075 kb on + strand, within PS417_11765at 2561.076 kb on - strand, within PS417_11765at 2561.116 kb on + strand, within PS417_11765at 2561.320 kb on + strandat 2561.339 kb on - strandat 2561.347 kb on + strandat 2561.347 kb on + strandat 2561.382 kb on + strandat 2561.444 kb on + strandat 2561.922 kb on + strand, within PS417_11770at 2561.922 kb on + strand, within PS417_11770at 2561.955 kb on + strand, within PS417_11770at 2561.955 kb on + strandat 2562.315 kb on + strandat 2562.316 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
remove
2,559,690 - PS417_11760 0.81 +0.9
2,560,051 - +0.6
2,560,079 + -0.9
2,560,079 + +0.4
2,560,092 - +0.0
2,560,307 + -0.3
2,560,308 - -0.3
2,560,308 - -1.5
2,560,399 + +0.2
2,560,400 - +1.1
2,560,621 + PS417_11765 0.27 -0.8
2,560,622 - PS417_11765 0.27 -0.1
2,560,641 - PS417_11765 0.29 -2.0
2,560,892 - PS417_11765 0.54 -1.4
2,561,075 + PS417_11765 0.73 +0.9
2,561,076 - PS417_11765 0.73 -0.3
2,561,116 + PS417_11765 0.77 -0.2
2,561,320 + -0.5
2,561,339 - +0.0
2,561,347 + -0.3
2,561,347 + -0.3
2,561,382 + +1.2
2,561,444 + +0.1
2,561,922 + PS417_11770 0.55 -0.8
2,561,922 + PS417_11770 0.55 -1.7
2,561,955 + PS417_11770 0.58 -0.0
2,561,955 + +1.5
2,562,315 + -1.3
2,562,316 - +0.0

Or see this region's nucleotide sequence